Variant report

Variant	rs56132068
Chromosome Location	chr11:36756686-36756687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10501159	0.85[EUR][1000 genomes]
rs10501160	0.85[EUR][1000 genomes]
rs10836580	0.85[EUR][1000 genomes]
rs10836581	0.85[EUR][1000 genomes]
rs11033708	0.85[EUR][1000 genomes]
rs11033712	0.85[EUR][1000 genomes]
rs11033717	0.85[EUR][1000 genomes]
rs11033725	0.85[EUR][1000 genomes]
rs11033727	0.85[EUR][1000 genomes]
rs11033735	0.85[EUR][1000 genomes]
rs11822918	0.83[EUR][1000 genomes]
rs12279449	0.85[EUR][1000 genomes]
rs12279924	0.85[EUR][1000 genomes]
rs12286114	0.80[EUR][1000 genomes]
rs12292943	0.85[EUR][1000 genomes]
rs12293987	0.85[EUR][1000 genomes]
rs12295400	0.85[EUR][1000 genomes]
rs12416842	0.87[EUR][1000 genomes]
rs12417057	0.87[EUR][1000 genomes]
rs12417768	0.87[EUR][1000 genomes]
rs12417778	0.87[EUR][1000 genomes]
rs12417783	0.87[EUR][1000 genomes]
rs12419750	0.87[EUR][1000 genomes]
rs12420509	0.87[EUR][1000 genomes]
rs12420930	0.87[EUR][1000 genomes]
rs12420954	0.85[EUR][1000 genomes]
rs12421512	0.87[EUR][1000 genomes]
rs12421641	0.80[EUR][1000 genomes]
rs1391542	0.87[EUR][1000 genomes]
rs1391543	0.87[EUR][1000 genomes]
rs1399600	0.80[EUR][1000 genomes]
rs1498343	0.85[EUR][1000 genomes]
rs1498344	0.85[EUR][1000 genomes]
rs1515057	0.87[EUR][1000 genomes]
rs16929067	0.81[EUR][1000 genomes]
rs16929071	0.80[EUR][1000 genomes]
rs16929076	0.80[EUR][1000 genomes]
rs16929119	0.87[EUR][1000 genomes]
rs16929136	0.85[EUR][1000 genomes]
rs16929145	0.87[EUR][1000 genomes]
rs16929147	0.87[EUR][1000 genomes]
rs16929149	0.87[EUR][1000 genomes]
rs16929170	0.87[EUR][1000 genomes]
rs16929178	0.84[EUR][1000 genomes]
rs16929182	0.85[EUR][1000 genomes]
rs16929194	0.87[EUR][1000 genomes]
rs16929197	0.87[EUR][1000 genomes]
rs16929201	0.87[EUR][1000 genomes]
rs16929204	0.87[EUR][1000 genomes]
rs16929208	0.85[EUR][1000 genomes]
rs16929216	0.87[EUR][1000 genomes]
rs16929227	0.87[EUR][1000 genomes]
rs16929247	0.85[EUR][1000 genomes]
rs16929249	0.87[EUR][1000 genomes]
rs2422296	0.85[EUR][1000 genomes]
rs2422297	0.85[EUR][1000 genomes]
rs34435837	0.85[EUR][1000 genomes]
rs35329885	0.85[EUR][1000 genomes]
rs3740957	0.87[EUR][1000 genomes]
rs4151051	0.80[EUR][1000 genomes]
rs57856061	0.85[EUR][1000 genomes]
rs58084113	0.85[EUR][1000 genomes]
rs59179248	0.85[EUR][1000 genomes]
rs60281434	0.85[EUR][1000 genomes]
rs61432856	0.85[EUR][1000 genomes]
rs61686617	0.85[EUR][1000 genomes]
rs7102491	0.87[EUR][1000 genomes]
rs7102864	0.87[EUR][1000 genomes]
rs7103064	0.85[EUR][1000 genomes]
rs7110520	0.81[EUR][1000 genomes]
rs7124815	0.85[EUR][1000 genomes]
rs7125002	0.85[EUR][1000 genomes]
rs7128419	0.85[EUR][1000 genomes]
rs7130536	0.85[EUR][1000 genomes]
rs7131496	0.85[EUR][1000 genomes]
rs72640809	0.82[EUR][1000 genomes]
rs72640869	0.81[EUR][1000 genomes]
rs72640870	0.85[EUR][1000 genomes]
rs72640871	0.85[EUR][1000 genomes]
rs72640872	0.85[EUR][1000 genomes]
rs73437905	0.87[EUR][1000 genomes]
rs73437936	0.87[EUR][1000 genomes]
rs73437939	0.87[EUR][1000 genomes]
rs73437947	0.85[EUR][1000 genomes]
rs73437955	0.87[EUR][1000 genomes]
rs73437958	0.87[EUR][1000 genomes]
rs73437965	0.87[EUR][1000 genomes]
rs73437973	0.87[EUR][1000 genomes]
rs73437989	0.85[EUR][1000 genomes]
rs73438001	0.85[EUR][1000 genomes]
rs73455517	0.80[EUR][1000 genomes]
rs73455527	0.80[EUR][1000 genomes]
rs73455539	0.85[EUR][1000 genomes]
rs73455545	0.87[EUR][1000 genomes]
rs73455552	0.87[EUR][1000 genomes]
rs73455553	0.87[EUR][1000 genomes]
rs7480202	0.80[EUR][1000 genomes]
rs7926684	0.87[EUR][1000 genomes]
rs7927358	0.87[EUR][1000 genomes]
rs7929473	0.85[EUR][1000 genomes]
rs7937683	0.85[EUR][1000 genomes]
rs7944879	0.87[EUR][1000 genomes]
rs7946993	0.87[EUR][1000 genomes]
rs867801	0.85[EUR][1000 genomes]
rs867804	0.85[EUR][1000 genomes]
rs868613	0.87[EUR][1000 genomes]
rs869206	0.85[EUR][1000 genomes]
rs885374	0.87[EUR][1000 genomes]
rs969611	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv11137	chr11:36730247-36788022	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv2761663	chr11:36730335-36786817	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36746800-36759600	Weak transcription	Thymus	Thymus

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