Variant report

Variant	rs12286114
Chromosome Location	chr11:36609851-36609852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10501159	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10501160	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836580	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836581	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033708	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033712	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033717	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033725	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033727	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033735	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11822918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279449	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12279924	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12292943	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12293987	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12295400	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12416842	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12417057	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12417768	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12417778	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12417783	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12419750	0.93[EUR][1000 genomes]
rs12420509	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12420930	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12420954	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12421512	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12421641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391542	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1391543	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1399600	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498343	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1498344	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1515057	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929067	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929073	0.84[EUR][1000 genomes]
rs16929076	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929119	0.93[EUR][1000 genomes]
rs16929136	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929145	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929147	0.93[EUR][1000 genomes]
rs16929149	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929170	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929178	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929182	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929194	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929197	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929201	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929204	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929208	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929216	0.93[EUR][1000 genomes]
rs16929227	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929247	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929249	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2422296	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2422297	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34435837	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35329885	0.92[EUR][1000 genomes]
rs3740957	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4151013	0.85[ASN][1000 genomes]
rs4151045	0.81[EUR][1000 genomes]
rs4151051	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132068	0.80[EUR][1000 genomes]
rs58084113	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61432856	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61686617	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7102491	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7102864	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7103064	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7107464	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110520	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7124815	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7125002	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7128419	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7130536	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7131496	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437905	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437936	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437939	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437947	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437955	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437958	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437965	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73437973	0.93[EUR][1000 genomes]
rs73437989	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73438001	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73455516	0.84[EUR][1000 genomes]
rs73455517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455518	0.84[EUR][1000 genomes]
rs73455527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455531	0.84[EUR][1000 genomes]
rs73455534	0.81[EUR][1000 genomes]
rs73455539	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73455545	0.93[EUR][1000 genomes]
rs73455552	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73455553	0.93[EUR][1000 genomes]
rs7480202	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926684	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927358	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7929473	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7937683	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7944879	0.93[EUR][1000 genomes]
rs7946993	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs867801	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs867804	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs868613	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs869206	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs885374	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs969611	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36607800-36611000	Enhancers	Dnd41	blood
2	chr11:36609400-36610600	Enhancers	Fetal Thymus	thymus
3	chr11:36609600-36610000	Weak transcription	Thymus	Thymus

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