Variant report

Variant	rs7107464
Chromosome Location	chr11:36584944-36584945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:36584910-36584959	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:36526154..36527898-chr11:36582469..36585406,2	K562	blood:
2	chr11:36583929..36586426-chr11:36615701..36617624,2	MCF-7	breast:
3	chr11:36583267..36585722-chr11:36587213..36588759,2	K562	blood:

Variant related genes	Relation type
RAG1	TF binding region
ENSG00000166352	Chromatin interaction
ENSG00000175097	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10501159	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10501160	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10836580	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10836581	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11033708	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11033712	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs11033725	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11033727	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11822918	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12279449	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12286114	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12292943	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12293987	1.00[JPT][hapmap]
rs12295400	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12416842	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12417057	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12417768	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12417778	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12417783	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12419750	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs12420509	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12420930	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12420954	1.00[JPT][hapmap]
rs12421512	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12421641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1391542	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1391543	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1399600	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1515057	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929119	0.85[CHB][hapmap]
rs16929136	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929145	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929147	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16929149	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16929170	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929178	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929182	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16929194	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16929197	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16929201	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929204	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929216	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs16929227	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929247	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16929249	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16929265	1.00[JPT][hapmap]
rs2422296	0.81[ASN][1000 genomes]
rs2422297	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3740957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4151013	0.81[ASN][1000 genomes]
rs4151051	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61686617	0.84[AMR][1000 genomes]
rs7102864	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7103064	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7124815	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7128419	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7131496	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs73453401	0.81[EUR][1000 genomes]
rs73455517	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73455527	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73455539	0.81[ASN][1000 genomes]
rs7480202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926684	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7927358	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7929473	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7937683	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7938326	1.00[CEU][hapmap]
rs7939136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7946993	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs867801	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs867804	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs868613	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs869206	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs885374	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs969611	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36580400-36586000	Weak transcription	Liver	Liver
2	chr11:36581600-36586200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:36582000-36586000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:36582000-36587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36582400-36586200	Weak transcription	Aorta	Aorta
6	chr11:36583600-36585600	Weak transcription	Dnd41	blood
7	chr11:36584400-36586200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:36584600-36585200	Weak transcription	Thymus	Thymus
9	chr11:36584800-36586200	Enhancers	Fetal Thymus	thymus

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