Variant report

Variant	rs7938326
Chromosome Location	chr11:36566248-36566249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10501158	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs10501159	0.82[CEU][hapmap]
rs10501160	0.82[CEU][hapmap]
rs10501161	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10836581	0.82[CEU][hapmap]
rs11033712	0.82[CEU][hapmap]
rs11033725	0.82[CEU][hapmap]
rs11033727	0.82[CEU][hapmap]
rs11033734	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12271660	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12279449	0.82[CEU][hapmap]
rs12292943	0.82[CEU][hapmap]
rs12295400	0.82[CEU][hapmap]
rs12416842	0.82[CEU][hapmap]
rs12417057	0.82[CEU][hapmap]
rs12417264	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12417778	0.82[CEU][hapmap]
rs12417783	0.82[CEU][hapmap]
rs12419174	1.00[CHB][hapmap]
rs12419750	0.82[CEU][hapmap]
rs12420509	0.82[CEU][hapmap]
rs12420930	0.82[CEU][hapmap]
rs12420954	0.82[CEU][hapmap]
rs12421512	0.82[CEU][hapmap]
rs12421514	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs12421531	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12421641	0.82[CEU][hapmap]
rs12422065	1.00[ASN][1000 genomes]
rs1391542	0.82[CEU][hapmap]
rs1391543	0.82[CEU][hapmap]
rs1399600	0.82[CEU][hapmap]
rs1498339	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1498340	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1515057	0.82[CEU][hapmap]
rs1566244	0.81[AMR][1000 genomes]
rs16929016	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16929071	0.82[CEU][hapmap]
rs16929073	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929076	0.82[CEU][hapmap]
rs16929126	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs16929136	0.82[CEU][hapmap]
rs16929138	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs16929141	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs16929147	1.00[CEU][hapmap]
rs16929149	0.82[CEU][hapmap]
rs16929170	0.82[CEU][hapmap]
rs16929178	0.82[CEU][hapmap]
rs16929182	0.82[CEU][hapmap]
rs16929194	0.82[CEU][hapmap]
rs16929197	0.82[CEU][hapmap]
rs16929201	0.82[CEU][hapmap]
rs16929204	0.82[CEU][hapmap]
rs16929216	0.82[CEU][hapmap]
rs16929222	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs16929227	0.82[CEU][hapmap]
rs16929249	0.82[CEU][hapmap]
rs16929268	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs1980131	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056094	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422297	0.82[CEU][hapmap]
rs2901704	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs3740957	0.82[CEU][hapmap]
rs4151000	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151040	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151045	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030489	0.83[EUR][1000 genomes]
rs58652755	0.84[AMR][1000 genomes]
rs7102864	0.82[CEU][hapmap]
rs7103064	0.82[CEU][hapmap]
rs7107464	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7124815	0.82[CEU][hapmap]
rs7125002	0.82[CEU][hapmap]
rs7128419	0.82[CEU][hapmap]
rs7130097	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs7131496	0.82[CEU][hapmap]
rs73437908	0.81[AMR][1000 genomes]
rs73437967	0.81[AMR][1000 genomes]
rs73437975	0.81[AMR][1000 genomes]
rs73439916	0.81[AMR][1000 genomes]
rs73439922	0.81[AMR][1000 genomes]
rs73439925	0.81[AMR][1000 genomes]
rs73439930	0.81[AMR][1000 genomes]
rs73439932	0.81[AMR][1000 genomes]
rs73439933	0.81[AMR][1000 genomes]
rs73453401	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455516	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455518	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455531	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455534	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73455548	0.81[AMR][1000 genomes]
rs7480202	0.82[CEU][hapmap]
rs7926684	0.82[CEU][hapmap]
rs7929473	0.82[CEU][hapmap]
rs7929652	0.81[AMR][1000 genomes]
rs7937683	0.82[CEU][hapmap]
rs7939136	1.00[CEU][hapmap]
rs7946993	0.82[CEU][hapmap]
rs867801	0.82[CEU][hapmap]
rs867803	0.81[AMR][1000 genomes]
rs867804	0.82[CEU][hapmap]
rs868613	0.82[CEU][hapmap]
rs869206	0.82[CEU][hapmap]
rs869207	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs871912	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs872053	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885374	0.82[CEU][hapmap]
rs955772	0.82[CEU][hapmap]
rs969611	0.82[CEU][hapmap]
rs9971465	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9971578	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2760215	chr11:36559278-36573022	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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