Variant report

Variant	rs16929073
Chromosome Location	chr11:36609242-36609243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10501158	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10501161	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11033731	0.92[EUR][1000 genomes]
rs11033732	0.92[EUR][1000 genomes]
rs11033733	0.92[EUR][1000 genomes]
rs11033734	0.89[EUR][1000 genomes]
rs11822918	0.81[EUR][1000 genomes]
rs12271660	0.92[EUR][1000 genomes]
rs12277101	0.92[EUR][1000 genomes]
rs12277310	0.92[EUR][1000 genomes]
rs12277468	0.92[EUR][1000 genomes]
rs12286114	0.84[EUR][1000 genomes]
rs12292391	0.89[EUR][1000 genomes]
rs12417264	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12418480	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12419483	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421044	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421514	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421531	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421641	0.84[EUR][1000 genomes]
rs12422065	1.00[ASN][1000 genomes]
rs12422069	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1399600	0.84[EUR][1000 genomes]
rs1498339	0.92[EUR][1000 genomes]
rs1498340	0.92[EUR][1000 genomes]
rs1498341	0.91[EUR][1000 genomes]
rs1498342	0.92[EUR][1000 genomes]
rs1566244	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16926237	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929016	1.00[ASN][1000 genomes]
rs16929067	0.85[EUR][1000 genomes]
rs16929071	0.84[EUR][1000 genomes]
rs16929076	0.84[EUR][1000 genomes]
rs16929126	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929138	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929141	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929222	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929268	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1980131	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056094	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901704	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4151000	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151040	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151045	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151051	0.84[EUR][1000 genomes]
rs57856061	0.82[EUR][1000 genomes]
rs58344758	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58652755	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58889177	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59179248	0.82[EUR][1000 genomes]
rs60281434	0.82[EUR][1000 genomes]
rs61272071	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7112274	0.94[EUR][1000 genomes]
rs7113687	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7115697	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7130097	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130556	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72640809	0.85[EUR][1000 genomes]
rs72640870	0.82[EUR][1000 genomes]
rs72640871	0.82[EUR][1000 genomes]
rs72640872	0.82[EUR][1000 genomes]
rs73437908	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73437967	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73437975	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439913	0.89[EUR][1000 genomes]
rs73439916	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439922	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439925	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439930	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439932	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439933	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439937	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439954	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439965	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439971	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439975	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73439987	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73439990	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73453401	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455517	0.84[EUR][1000 genomes]
rs73455518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455527	0.84[EUR][1000 genomes]
rs73455531	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455534	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455548	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7480202	0.84[EUR][1000 genomes]
rs7929652	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs867803	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs869207	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs871912	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs872053	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955772	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9971465	0.92[EUR][1000 genomes]
rs9971578	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36605800-36609400	Weak transcription	Fetal Thymus	thymus
2	chr11:36607800-36611000	Enhancers	Dnd41	blood
3	chr11:36608600-36609400	Weak transcription	Thymus	Thymus

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