Variant report

Variant	rs72640809
Chromosome Location	chr11:36748452-36748453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10501158	0.91[EUR][1000 genomes]
rs10501161	0.89[EUR][1000 genomes]
rs11033731	0.89[EUR][1000 genomes]
rs11033732	0.89[EUR][1000 genomes]
rs11033733	0.89[EUR][1000 genomes]
rs11033734	0.86[EUR][1000 genomes]
rs12271660	0.89[EUR][1000 genomes]
rs12277101	0.89[EUR][1000 genomes]
rs12277310	0.89[EUR][1000 genomes]
rs12277468	0.89[EUR][1000 genomes]
rs12292391	0.86[EUR][1000 genomes]
rs12417264	0.91[EUR][1000 genomes]
rs12418480	0.91[EUR][1000 genomes]
rs12419483	0.91[EUR][1000 genomes]
rs12421044	0.91[EUR][1000 genomes]
rs12421514	0.91[EUR][1000 genomes]
rs12421531	0.91[EUR][1000 genomes]
rs12422069	0.91[EUR][1000 genomes]
rs1498339	0.89[EUR][1000 genomes]
rs1498340	0.89[EUR][1000 genomes]
rs1498341	0.88[EUR][1000 genomes]
rs1498342	0.89[EUR][1000 genomes]
rs1566244	0.91[EUR][1000 genomes]
rs16926237	0.91[EUR][1000 genomes]
rs16929073	0.85[EUR][1000 genomes]
rs16929126	0.91[EUR][1000 genomes]
rs16929138	0.91[EUR][1000 genomes]
rs16929141	0.91[EUR][1000 genomes]
rs16929222	0.91[EUR][1000 genomes]
rs16929268	0.91[EUR][1000 genomes]
rs1980131	0.80[EUR][1000 genomes]
rs2901704	0.91[EUR][1000 genomes]
rs4151040	0.80[EUR][1000 genomes]
rs4151045	0.82[EUR][1000 genomes]
rs56132068	0.82[EUR][1000 genomes]
rs57856061	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58344758	0.91[EUR][1000 genomes]
rs58652755	0.91[EUR][1000 genomes]
rs58889177	0.91[EUR][1000 genomes]
rs59179248	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60281434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61272071	0.89[EUR][1000 genomes]
rs7112274	0.91[EUR][1000 genomes]
rs7113687	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7115697	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7130097	0.91[EUR][1000 genomes]
rs7130556	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72640808	0.93[ASN][1000 genomes]
rs72640869	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72640870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72640871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72640872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73437908	0.88[EUR][1000 genomes]
rs73437967	0.91[EUR][1000 genomes]
rs73437975	0.91[EUR][1000 genomes]
rs73439913	0.86[EUR][1000 genomes]
rs73439916	0.91[EUR][1000 genomes]
rs73439922	0.91[EUR][1000 genomes]
rs73439925	0.91[EUR][1000 genomes]
rs73439930	0.91[EUR][1000 genomes]
rs73439932	0.91[EUR][1000 genomes]
rs73439933	0.91[EUR][1000 genomes]
rs73439937	0.91[EUR][1000 genomes]
rs73439954	0.91[EUR][1000 genomes]
rs73439965	0.91[EUR][1000 genomes]
rs73439971	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73439975	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73439987	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73439990	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73455516	0.85[EUR][1000 genomes]
rs73455518	0.85[EUR][1000 genomes]
rs73455531	0.85[EUR][1000 genomes]
rs73455534	0.88[EUR][1000 genomes]
rs73455548	0.91[EUR][1000 genomes]
rs7929652	0.91[EUR][1000 genomes]
rs867803	0.91[EUR][1000 genomes]
rs869207	0.91[EUR][1000 genomes]
rs871912	0.91[EUR][1000 genomes]
rs955772	0.91[EUR][1000 genomes]
rs9971465	0.89[EUR][1000 genomes]
rs9971578	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv11137	chr11:36730247-36788022	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv2761663	chr11:36730335-36786817	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36746800-36759600	Weak transcription	Thymus	Thymus

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