Variant report

Variant	rs73455534
Chromosome Location	chr11:36612260-36612261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:36612016-36612293	HepG2	liver:	n/a	n/a
2	MAFF	chr11:36612071-36612281	HepG2	liver:	n/a	chr11:36612160-36612178
3	EP300	chr11:36611552-36612475	SK-N-SH	brain:	n/a	chr11:36612428-36612442
4	GATA2	chr11:36611946-36612401	SH-SY5Y	brain:	n/a	n/a
5	GATA3	chr11:36611852-36612423	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Variant related genes	Relation type
C11orf74	TF binding region

Extended variants
information (count: 187 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10501158	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10501159	0.81[EUR][1000 genomes]
rs10501160	0.81[EUR][1000 genomes]
rs10501161	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10836580	0.81[EUR][1000 genomes]
rs10836581	0.81[EUR][1000 genomes]
rs11033708	0.81[EUR][1000 genomes]
rs11033712	0.81[EUR][1000 genomes]
rs11033717	0.81[EUR][1000 genomes]
rs11033725	0.81[EUR][1000 genomes]
rs11033727	0.81[EUR][1000 genomes]
rs11033731	0.95[EUR][1000 genomes]
rs11033732	0.95[EUR][1000 genomes]
rs11033733	0.95[EUR][1000 genomes]
rs11033734	0.92[EUR][1000 genomes]
rs11033735	0.81[EUR][1000 genomes]
rs11822918	0.84[EUR][1000 genomes]
rs12271660	0.95[EUR][1000 genomes]
rs12277101	0.95[EUR][1000 genomes]
rs12277310	0.95[EUR][1000 genomes]
rs12277468	0.95[EUR][1000 genomes]
rs12279449	0.81[EUR][1000 genomes]
rs12279924	0.81[EUR][1000 genomes]
rs12286114	0.81[EUR][1000 genomes]
rs12292391	0.92[EUR][1000 genomes]
rs12292943	0.81[EUR][1000 genomes]
rs12293987	0.81[EUR][1000 genomes]
rs12295400	0.81[EUR][1000 genomes]
rs12416842	0.82[EUR][1000 genomes]
rs12417057	0.82[EUR][1000 genomes]
rs12417264	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12417768	0.82[EUR][1000 genomes]
rs12417778	0.82[EUR][1000 genomes]
rs12417783	0.82[EUR][1000 genomes]
rs12418480	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12419483	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12419750	0.82[EUR][1000 genomes]
rs12420509	0.82[EUR][1000 genomes]
rs12420930	0.82[EUR][1000 genomes]
rs12420954	0.81[EUR][1000 genomes]
rs12421044	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12421512	0.82[EUR][1000 genomes]
rs12421514	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12421531	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12421641	0.81[EUR][1000 genomes]
rs12422065	1.00[ASN][1000 genomes]
rs12422069	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1391542	0.82[EUR][1000 genomes]
rs1391543	0.82[EUR][1000 genomes]
rs1399600	0.81[EUR][1000 genomes]
rs1498339	0.95[EUR][1000 genomes]
rs1498340	0.95[EUR][1000 genomes]
rs1498341	0.94[EUR][1000 genomes]
rs1498342	0.95[EUR][1000 genomes]
rs1498343	0.81[EUR][1000 genomes]
rs1498344	0.81[EUR][1000 genomes]
rs1515057	0.82[EUR][1000 genomes]
rs1566244	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16926237	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929016	1.00[ASN][1000 genomes]
rs16929067	0.82[EUR][1000 genomes]
rs16929071	0.81[EUR][1000 genomes]
rs16929073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929076	0.81[EUR][1000 genomes]
rs16929119	0.82[EUR][1000 genomes]
rs16929126	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929136	0.81[EUR][1000 genomes]
rs16929138	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929141	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929145	0.82[EUR][1000 genomes]
rs16929147	0.82[EUR][1000 genomes]
rs16929149	0.82[EUR][1000 genomes]
rs16929170	0.82[EUR][1000 genomes]
rs16929182	0.81[EUR][1000 genomes]
rs16929194	0.82[EUR][1000 genomes]
rs16929197	0.82[EUR][1000 genomes]
rs16929201	0.82[EUR][1000 genomes]
rs16929204	0.82[EUR][1000 genomes]
rs16929208	0.81[EUR][1000 genomes]
rs16929216	0.82[EUR][1000 genomes]
rs16929222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929227	0.82[EUR][1000 genomes]
rs16929247	0.81[EUR][1000 genomes]
rs16929249	0.82[EUR][1000 genomes]
rs16929268	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1980131	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056094	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422296	0.81[EUR][1000 genomes]
rs2422297	0.81[EUR][1000 genomes]
rs2901704	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34435837	0.81[EUR][1000 genomes]
rs35329885	0.81[EUR][1000 genomes]
rs3740957	0.82[EUR][1000 genomes]
rs4151000	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151040	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151045	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151051	0.81[EUR][1000 genomes]
rs57856061	0.85[EUR][1000 genomes]
rs58084113	0.81[EUR][1000 genomes]
rs58344758	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58652755	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58889177	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59179248	0.85[EUR][1000 genomes]
rs60281434	0.85[EUR][1000 genomes]
rs61272071	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61432856	0.81[EUR][1000 genomes]
rs61686617	0.81[EUR][1000 genomes]
rs7102491	0.82[EUR][1000 genomes]
rs7102864	0.82[EUR][1000 genomes]
rs7103064	0.81[EUR][1000 genomes]
rs7112274	0.97[EUR][1000 genomes]
rs7113687	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7115697	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7124815	0.81[EUR][1000 genomes]
rs7125002	0.81[EUR][1000 genomes]
rs7128419	0.81[EUR][1000 genomes]
rs7130097	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7130536	0.81[EUR][1000 genomes]
rs7130556	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7131496	0.81[EUR][1000 genomes]
rs72640809	0.88[EUR][1000 genomes]
rs72640869	0.80[EUR][1000 genomes]
rs72640870	0.85[EUR][1000 genomes]
rs72640871	0.85[EUR][1000 genomes]
rs72640872	0.85[EUR][1000 genomes]
rs73437905	0.82[EUR][1000 genomes]
rs73437908	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73437936	0.82[EUR][1000 genomes]
rs73437939	0.82[EUR][1000 genomes]
rs73437947	0.81[EUR][1000 genomes]
rs73437955	0.82[EUR][1000 genomes]
rs73437958	0.82[EUR][1000 genomes]
rs73437965	0.82[EUR][1000 genomes]
rs73437967	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73437973	0.82[EUR][1000 genomes]
rs73437975	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73437989	0.81[EUR][1000 genomes]
rs73438001	0.81[EUR][1000 genomes]
rs73439913	0.92[EUR][1000 genomes]
rs73439916	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439922	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439925	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439930	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439932	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439933	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439937	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439954	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439965	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439971	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439975	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73439987	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73439990	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73453401	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455516	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455517	0.81[EUR][1000 genomes]
rs73455518	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455527	0.81[EUR][1000 genomes]
rs73455531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455539	0.81[EUR][1000 genomes]
rs73455545	0.82[EUR][1000 genomes]
rs73455548	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73455552	0.82[EUR][1000 genomes]
rs73455553	0.82[EUR][1000 genomes]
rs7480202	0.81[EUR][1000 genomes]
rs7926684	0.82[EUR][1000 genomes]
rs7927358	0.82[EUR][1000 genomes]
rs7929473	0.81[EUR][1000 genomes]
rs7929652	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7937683	0.81[EUR][1000 genomes]
rs7944879	0.82[EUR][1000 genomes]
rs7946993	0.82[EUR][1000 genomes]
rs867801	0.81[EUR][1000 genomes]
rs867803	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs867804	0.81[EUR][1000 genomes]
rs868613	0.82[EUR][1000 genomes]
rs869206	0.81[EUR][1000 genomes]
rs869207	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs871912	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs872053	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885374	0.82[EUR][1000 genomes]
rs955772	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs969611	0.82[EUR][1000 genomes]
rs9971465	0.95[EUR][1000 genomes]
rs9971578	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36611400-36616800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
2	chr11:36611600-36614200	Genic enhancers	Dnd41	blood
3	chr11:36612000-36612400	Flanking Active TSS	Thymus	Thymus

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