Variant report

Variant	rs4151040
Chromosome Location	chr11:36599069-36599070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10501158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10501159	1.00[CEU][hapmap]
rs10501160	1.00[CEU][hapmap]
rs10501161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10836580	1.00[CEU][hapmap]
rs10836581	1.00[CEU][hapmap]
rs11033708	1.00[CEU][hapmap]
rs11033712	1.00[CEU][hapmap]
rs11033725	1.00[CEU][hapmap]
rs11033727	1.00[CEU][hapmap]
rs11033731	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11033732	0.88[EUR][1000 genomes]
rs11033733	0.88[EUR][1000 genomes]
rs11033734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12271660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs12277101	0.88[EUR][1000 genomes]
rs12277310	0.88[EUR][1000 genomes]
rs12277468	0.88[EUR][1000 genomes]
rs12279449	1.00[CEU][hapmap]
rs12292391	0.85[EUR][1000 genomes]
rs12292943	1.00[CEU][hapmap]
rs12293987	1.00[CEU][hapmap]
rs12295400	1.00[CEU][hapmap]
rs12416842	1.00[CEU][hapmap]
rs12417057	1.00[CEU][hapmap]
rs12417264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12417768	1.00[CEU][hapmap]
rs12417778	1.00[CEU][hapmap]
rs12417783	1.00[CEU][hapmap]
rs12418480	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12419174	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12419483	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12419750	1.00[CEU][hapmap]
rs12420509	1.00[CEU][hapmap]
rs12420930	1.00[CEU][hapmap]
rs12420954	1.00[CEU][hapmap]
rs12421044	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12421512	1.00[CEU][hapmap]
rs12421514	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12421531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12421641	1.00[CEU][hapmap]
rs12422065	1.00[ASN][1000 genomes]
rs12422069	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1391542	1.00[CEU][hapmap]
rs1391543	1.00[CEU][hapmap]
rs1399600	1.00[CEU][hapmap]
rs1498339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs1498340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs1498341	0.86[EUR][1000 genomes]
rs1498342	0.88[EUR][1000 genomes]
rs1515057	1.00[CEU][hapmap]
rs1566244	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16926237	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929016	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16929067	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16929071	1.00[CEU][hapmap]
rs16929073	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929076	1.00[CEU][hapmap]
rs16929119	1.00[CEU][hapmap]
rs16929126	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929136	1.00[CEU][hapmap]
rs16929138	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929145	1.00[CEU][hapmap]
rs16929147	1.00[CEU][hapmap]
rs16929149	1.00[CEU][hapmap]
rs16929170	1.00[CEU][hapmap]
rs16929178	1.00[CEU][hapmap]
rs16929182	1.00[CEU][hapmap]
rs16929194	1.00[CEU][hapmap]
rs16929197	1.00[CEU][hapmap]
rs16929201	1.00[CEU][hapmap]
rs16929204	1.00[CEU][hapmap]
rs16929216	1.00[CEU][hapmap]
rs16929222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929227	1.00[CEU][hapmap]
rs16929247	1.00[CEU][hapmap]
rs16929249	1.00[CEU][hapmap]
rs16929268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1980131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422297	1.00[CEU][hapmap]
rs2901704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3740957	1.00[CEU][hapmap]
rs4151000	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58344758	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58652755	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58889177	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61272071	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7102864	1.00[CEU][hapmap]
rs7103064	1.00[CEU][hapmap]
rs7112274	0.89[EUR][1000 genomes]
rs7113687	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7115697	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7124815	1.00[CEU][hapmap]
rs7125002	1.00[CEU][hapmap]
rs7128419	1.00[CEU][hapmap]
rs7130097	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7130556	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7131496	1.00[CEU][hapmap]
rs72640809	0.80[EUR][1000 genomes]
rs73437908	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73437967	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73437975	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439913	0.85[EUR][1000 genomes]
rs73439916	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439922	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439925	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439930	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439932	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439933	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439937	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439954	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439965	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439971	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439975	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73439987	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73439990	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73453401	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455516	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455518	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455531	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455534	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455548	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7480202	1.00[CEU][hapmap]
rs7926684	1.00[CEU][hapmap]
rs7927358	1.00[CEU][hapmap]
rs7929473	1.00[CEU][hapmap]
rs7929652	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7937683	1.00[CEU][hapmap]
rs7938326	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7939136	0.82[CEU][hapmap]
rs7946993	1.00[CEU][hapmap]
rs867801	1.00[CEU][hapmap]
rs867803	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs867804	1.00[CEU][hapmap]
rs868613	1.00[CEU][hapmap]
rs869206	1.00[CEU][hapmap]
rs869207	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs871912	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs872053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885374	1.00[CEU][hapmap]
rs955772	1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs969611	1.00[CEU][hapmap]
rs9971465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9971578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36586800-36599400	Weak transcription	Liver	Liver
2	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:36589800-36600800	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr11:36593200-36600800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
5	chr11:36595800-36600400	Weak transcription	Aorta	Aorta
6	chr11:36596400-36602400	Weak transcription	Pancreas	Pancrea
7	chr11:36596600-36603000	Weak transcription	Left Ventricle	heart
8	chr11:36597000-36602600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:36597400-36599200	Weak transcription	Spleen	Spleen
10	chr11:36598000-36600800	Enhancers	Fetal Heart	heart
11	chr11:36598200-36599400	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:36598200-36600400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:36598400-36599200	Weak transcription	Fetal Brain Male	brain
14	chr11:36598400-36599400	Active TSS	Thymus	Thymus
15	chr11:36598600-36600600	Enhancers	HSMMtube	muscle
16	chr11:36598600-36600600	Enhancers	NH-A	brain
17	chr11:36598800-36600000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:36598800-36600600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:36598800-36600600	Enhancers	Rectal Smooth Muscle	rectum
20	chr11:36598800-36600600	Enhancers	HSMM	muscle
21	chr11:36599000-36599200	Flanking Active TSS	Osteobl	bone
22	chr11:36599000-36599600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:36599000-36600200	Enhancers	NHDF-Ad	bronchial
24	chr11:36599000-36600400	Enhancers	Brain Germinal Matrix	brain

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