Variant report

Variant	rs10501161
Chromosome Location	chr11:36671669-36671670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10501158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501159	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10501160	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10836580	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10836581	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033708	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033712	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033717	0.85[EUR][1000 genomes]
rs11033725	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033727	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033731	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033732	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033733	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033735	0.85[EUR][1000 genomes]
rs11822918	0.83[EUR][1000 genomes]
rs12271660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277101	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277310	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277468	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279449	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12279924	0.85[EUR][1000 genomes]
rs12292391	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292943	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12293987	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12295400	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12416842	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417057	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417768	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417778	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417783	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12418480	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419174	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12419483	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12419750	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420509	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420930	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420954	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12421044	0.98[EUR][1000 genomes]
rs12421512	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12421514	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12421531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421641	1.00[CEU][hapmap]
rs12422069	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1391543	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1399600	1.00[CEU][hapmap]
rs1498339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498341	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498342	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498343	0.85[EUR][1000 genomes]
rs1498344	0.85[EUR][1000 genomes]
rs1515057	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1566244	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926237	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929016	1.00[CHB][hapmap]
rs16929067	1.00[CEU][hapmap]
rs16929071	1.00[CEU][hapmap]
rs16929073	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929076	1.00[CEU][hapmap]
rs16929119	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929126	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929136	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16929138	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929141	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929145	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929147	1.00[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929149	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929170	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929178	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16929182	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16929194	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929197	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929201	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929204	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929208	0.85[EUR][1000 genomes]
rs16929216	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929227	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929247	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16929249	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2056094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs2422296	0.85[EUR][1000 genomes]
rs2422297	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2901704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34435837	0.85[EUR][1000 genomes]
rs35329885	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3740957	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4151000	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs4151040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4151045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57856061	0.86[EUR][1000 genomes]
rs58084113	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58344758	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58652755	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58889177	0.98[EUR][1000 genomes]
rs59179248	0.86[EUR][1000 genomes]
rs60281434	0.86[EUR][1000 genomes]
rs61272071	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61432856	0.85[EUR][1000 genomes]
rs61686617	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7102491	0.84[EUR][1000 genomes]
rs7102864	1.00[CEU][hapmap];0.89[MKK][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7103064	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7112274	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7113687	0.97[EUR][1000 genomes]
rs7115697	0.97[EUR][1000 genomes]
rs7124815	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7125002	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7128419	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7130097	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7130536	0.85[EUR][1000 genomes]
rs7130556	0.97[EUR][1000 genomes]
rs7131496	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs72640809	0.89[EUR][1000 genomes]
rs72640869	0.82[EUR][1000 genomes]
rs72640870	0.86[EUR][1000 genomes]
rs72640871	0.86[EUR][1000 genomes]
rs72640872	0.86[EUR][1000 genomes]
rs73437905	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437908	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73437936	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437939	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437947	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73437955	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437958	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437965	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437967	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73437973	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73437975	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73437989	0.85[EUR][1000 genomes]
rs73438001	0.85[EUR][1000 genomes]
rs73439913	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439916	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73439922	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439925	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439930	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439932	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439933	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439937	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439954	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73439965	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73439971	0.98[EUR][1000 genomes]
rs73439975	0.98[EUR][1000 genomes]
rs73439987	0.97[EUR][1000 genomes]
rs73439990	0.97[EUR][1000 genomes]
rs73453401	0.90[AMR][1000 genomes]
rs73455516	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73455518	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73455531	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73455534	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73455539	0.85[EUR][1000 genomes]
rs73455545	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73455548	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455552	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73455553	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7480202	1.00[CEU][hapmap]
rs7926684	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7927358	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7929473	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7929652	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937683	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7938326	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7939136	0.82[CEU][hapmap]
rs7944879	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7946993	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs867801	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs867803	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs867804	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs868613	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs869206	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs869207	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs871912	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs872053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs885374	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs955772	1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs969611	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9971465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36630000-36678800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36630600-36682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:36641400-36681000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:36642000-36681000	Weak transcription	Fetal Kidney	kidney
5	chr11:36646400-36677000	Weak transcription	Lung	lung
6	chr11:36648600-36681400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:36648800-36680600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:36650600-36687000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:36650800-36682600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:36651000-36684000	Weak transcription	HSMMtube	muscle
11	chr11:36653600-36680800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:36653800-36684400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:36656400-36680600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:36656800-36677800	Weak transcription	Psoas Muscle	Psoas
15	chr11:36660800-36685800	Weak transcription	Fetal Stomach	stomach
16	chr11:36661200-36678600	Weak transcription	Fetal Thymus	thymus
17	chr11:36661400-36681200	Weak transcription	Gastric	stomach
18	chr11:36661600-36681200	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:36666800-36679000	Weak transcription	Spleen	Spleen
20	chr11:36666800-36692800	Weak transcription	Fetal Heart	heart
21	chr11:36667400-36680800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:36668000-36683800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:36668200-36673800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:36668200-36680600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:36668200-36680800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:36668200-36681000	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:36669400-36671800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr11:36669400-36672000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:36669600-36671800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:36669600-36672000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:36669600-36680600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:36669800-36678400	Weak transcription	Aorta	Aorta
33	chr11:36669800-36685600	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:36670200-36682600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:36670400-36671800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:36670400-36674400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:36670600-36680600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:36670600-36680600	Weak transcription	Fetal Lung	lung
39	chr11:36670600-36680600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:36670600-36680800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:36670600-36680800	Weak transcription	Left Ventricle	heart
42	chr11:36670600-36680800	Weak transcription	Ovary	ovary
43	chr11:36670600-36682800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:36670800-36680800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:36670800-36683600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:36671000-36680600	Weak transcription	Adipose Nuclei	Adipose
47	chr11:36671000-36683800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:36671400-36671800	Strong transcription	Liver	Liver
49	chr11:36671400-36672000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:36671600-36671800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links