Variant report

Variant	rs56134011
Chromosome Location	chr9:97931025-97931026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97928874..97931668-chr9:97931897..97933841,2	K562	blood:
2	chr9:97879438..97881501-chr9:97930611..97932130,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10453242	1.00[AFR][1000 genomes]
rs55651673	1.00[AFR][1000 genomes]
rs56025140	1.00[AFR][1000 genomes]
rs56280046	0.87[AFR][1000 genomes]
rs56354054	0.89[AFR][1000 genomes]
rs56737425	0.87[AFR][1000 genomes]
rs56761320	1.00[AFR][1000 genomes]
rs57312263	0.87[AFR][1000 genomes]
rs57883597	0.87[AFR][1000 genomes]
rs59611901	0.87[AFR][1000 genomes]
rs60346856	1.00[AFR][1000 genomes]
rs60497587	0.89[AFR][1000 genomes]
rs61462331	1.00[AFR][1000 genomes]
rs73654524	0.87[AFR][1000 genomes]
rs73654529	0.87[AFR][1000 genomes]
rs73654531	0.87[AFR][1000 genomes]
rs73654532	0.87[AFR][1000 genomes]
rs73654534	1.00[AFR][1000 genomes]
rs73654535	1.00[AFR][1000 genomes]
rs73654536	1.00[AFR][1000 genomes]
rs73654537	1.00[AFR][1000 genomes]
rs73654538	1.00[AFR][1000 genomes]
rs73654540	1.00[AFR][1000 genomes]
rs73654542	0.87[AFR][1000 genomes]
rs73654543	1.00[AFR][1000 genomes]
rs73654544	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
2	chr9:97906400-97933000	Weak transcription	Fetal Kidney	kidney
3	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:97910800-97933000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
6	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
7	chr9:97920400-97951800	Weak transcription	HepG2	liver
8	chr9:97920600-97933000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:97920600-97933400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:97920800-97931400	Weak transcription	Hela-S3	cervix
11	chr9:97920800-97931400	Weak transcription	K562	blood
12	chr9:97920800-97932800	Weak transcription	GM12878-XiMat	blood
13	chr9:97925800-97938000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:97925800-97944800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:97926000-97937800	Weak transcription	Psoas Muscle	Psoas
16	chr9:97926400-97934400	Weak transcription	Primary B cells from cord blood	blood
17	chr9:97926800-97933200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:97927600-97950400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:97928600-97933200	Weak transcription	NHEK	skin
20	chr9:97929200-97931200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:97929600-97931400	Weak transcription	Dnd41	blood
22	chr9:97929600-97932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:97930000-97945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:97930000-97945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:97930200-97931200	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr9:97930200-97931800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr9:97930200-97932200	Strong transcription	Primary T cells from cord blood	blood
28	chr9:97930400-97931200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:97930400-97931800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:97930400-97932200	Strong transcription	Fetal Intestine Large	intestine
31	chr9:97930600-97933000	Weak transcription	Fetal Stomach	stomach
32	chr9:97930600-97933000	Weak transcription	A549	lung
33	chr9:97930600-97933200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr9:97930600-97939400	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:97930600-97943400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:97930600-97944800	Weak transcription	Lung	lung
37	chr9:97930600-97950400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:97930600-97950800	Weak transcription	Thymus	Thymus
39	chr9:97930600-97952000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:97930800-97931200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:97930800-97932600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:97930800-97932800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:97930800-97932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:97930800-97932800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr9:97930800-97933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr9:97930800-97933000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:97930800-97933000	Weak transcription	NH-A	brain
48	chr9:97930800-97933200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr9:97930800-97933200	Weak transcription	Osteobl	bone
50	chr9:97930800-97933600	Weak transcription	Primary monocytes fromperipheralblood	blood

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