Variant report

Variant	rs73654542
Chromosome Location	chr9:98025256-98025257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98024543..98026089-chr9:98030746..98033601,2	K562	blood:
2	chr9:98015101..98016805-chr9:98024708..98026804,2	MCF-7	breast:
3	chr9:98025141..98027582-chr9:98078429..98080414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10453242	0.87[AFR][1000 genomes]
rs55651673	0.87[AFR][1000 genomes]
rs56025140	0.87[AFR][1000 genomes]
rs56134011	0.87[AFR][1000 genomes]
rs56280046	1.00[AFR][1000 genomes]
rs56737425	1.00[AFR][1000 genomes]
rs56761320	0.87[AFR][1000 genomes]
rs57312263	1.00[AFR][1000 genomes]
rs57883597	1.00[AFR][1000 genomes]
rs59611901	1.00[AFR][1000 genomes]
rs60346856	0.87[AFR][1000 genomes]
rs61462331	0.87[AFR][1000 genomes]
rs73654524	1.00[AFR][1000 genomes]
rs73654529	1.00[AFR][1000 genomes]
rs73654531	1.00[AFR][1000 genomes]
rs73654532	1.00[AFR][1000 genomes]
rs73654534	0.87[AFR][1000 genomes]
rs73654535	0.87[AFR][1000 genomes]
rs73654536	0.87[AFR][1000 genomes]
rs73654537	0.87[AFR][1000 genomes]
rs73654538	0.87[AFR][1000 genomes]
rs73654540	0.87[AFR][1000 genomes]
rs73654543	0.87[AFR][1000 genomes]
rs73654544	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98009000-98026600	Weak transcription	A549	lung
2	chr9:98009200-98027600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:98013200-98025400	Weak transcription	Ovary	ovary
4	chr9:98013200-98027400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:98013400-98027600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:98015600-98027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:98017600-98030800	Weak transcription	Fetal Stomach	stomach
8	chr9:98023800-98025600	Enhancers	HepG2	liver
9	chr9:98024200-98027600	Weak transcription	Pancreas	Pancrea
10	chr9:98024200-98034600	Weak transcription	Esophagus	oesophagus
11	chr9:98024400-98027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:98024400-98027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:98024400-98027400	Weak transcription	NHLF	lung
14	chr9:98024400-98027600	Weak transcription	Gastric	stomach
15	chr9:98024400-98027600	Weak transcription	Small Intestine	intestine
16	chr9:98024600-98026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:98024600-98027000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:98024600-98027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:98024600-98027200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:98024600-98027400	Weak transcription	NH-A	brain
21	chr9:98024800-98026800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:98024800-98027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:98024800-98027600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:98024800-98029400	Weak transcription	Right Ventricle	heart
25	chr9:98025000-98026200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:98025000-98026400	Weak transcription	Stomach Mucosa	stomach
27	chr9:98025000-98027000	Weak transcription	K562	blood
28	chr9:98025000-98027400	Weak transcription	Fetal Intestine Large	intestine
29	chr9:98025200-98026800	Weak transcription	Fetal Intestine Small	intestine

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