Variant report

Variant	rs73654540
Chromosome Location	chr9:97960902-97960903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97960729..97962513-chr9:97968919..97971853,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10453242	1.00[AFR][1000 genomes]
rs55651673	1.00[AFR][1000 genomes]
rs56025140	1.00[AFR][1000 genomes]
rs56134011	1.00[AFR][1000 genomes]
rs56280046	0.87[AFR][1000 genomes]
rs56354054	0.89[AFR][1000 genomes]
rs56737425	0.87[AFR][1000 genomes]
rs56761320	1.00[AFR][1000 genomes]
rs57312263	0.87[AFR][1000 genomes]
rs57883597	0.87[AFR][1000 genomes]
rs59611901	0.87[AFR][1000 genomes]
rs60346856	1.00[AFR][1000 genomes]
rs60497587	0.89[AFR][1000 genomes]
rs61462331	1.00[AFR][1000 genomes]
rs73654524	0.87[AFR][1000 genomes]
rs73654529	0.87[AFR][1000 genomes]
rs73654531	0.87[AFR][1000 genomes]
rs73654532	0.87[AFR][1000 genomes]
rs73654534	1.00[AFR][1000 genomes]
rs73654535	1.00[AFR][1000 genomes]
rs73654536	1.00[AFR][1000 genomes]
rs73654537	1.00[AFR][1000 genomes]
rs73654538	1.00[AFR][1000 genomes]
rs73654542	0.87[AFR][1000 genomes]
rs73654543	1.00[AFR][1000 genomes]
rs73654544	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97952600-97963200	Weak transcription	Spleen	Spleen
2	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97953000-97961600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:97953000-97961600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:97956000-97963600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:97958800-97961000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:97958800-97968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:97959000-97961000	Enhancers	HSMMtube	muscle
9	chr9:97959000-97968400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97959200-97961200	Enhancers	HSMM	muscle
11	chr9:97959200-97962000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:97959400-97961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:97959400-97961200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:97959600-97961000	Enhancers	NH-A	brain
15	chr9:97959600-97961200	Enhancers	HMEC	breast
16	chr9:97959600-97961200	Enhancers	Osteobl	bone
17	chr9:97959800-97961000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:97959800-97961000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:97959800-97961000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:97959800-97961000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:97959800-97961000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:97959800-97961000	Enhancers	Fetal Muscle Leg	muscle
23	chr9:97959800-97961000	Enhancers	Right Atrium	heart
24	chr9:97959800-97961000	Enhancers	NHDF-Ad	bronchial
25	chr9:97959800-97961000	Enhancers	NHEK	skin
26	chr9:97959800-97961200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:97959800-97961200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:97960000-97961800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97960000-97964800	Enhancers	Fetal Stomach	stomach
30	chr9:97960200-97961000	Weak transcription	Ovary	ovary
31	chr9:97960200-97966600	Weak transcription	Lung	lung
32	chr9:97960400-97961000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr9:97960400-97961600	Weak transcription	Esophagus	oesophagus
34	chr9:97960400-97961600	Weak transcription	Pancreas	Pancrea
35	chr9:97960400-97961600	Weak transcription	Stomach Mucosa	stomach
36	chr9:97960400-97967000	Weak transcription	Aorta	Aorta
37	chr9:97960600-97961800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:97960600-97963200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:97960600-97963400	Weak transcription	Fetal Lung	lung
40	chr9:97960600-97964600	Weak transcription	Gastric	stomach
41	chr9:97960600-97969200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:97960800-97961800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:97960800-97963800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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