Variant report

Variant	rs59611901
Chromosome Location	chr9:97818776-97818777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97809451..97811509-chr9:97815332..97819190,3	K562	blood:
2	chr9:97809147..97811872-chr9:97817665..97820103,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10453242	0.87[AFR][1000 genomes]
rs55651673	0.87[AFR][1000 genomes]
rs56025140	0.87[AFR][1000 genomes]
rs56134011	0.87[AFR][1000 genomes]
rs56280046	1.00[AFR][1000 genomes]
rs56737425	1.00[AFR][1000 genomes]
rs56761320	0.87[AFR][1000 genomes]
rs57312263	1.00[AFR][1000 genomes]
rs57883597	1.00[AFR][1000 genomes]
rs60346856	0.87[AFR][1000 genomes]
rs61462331	0.87[AFR][1000 genomes]
rs73654524	1.00[AFR][1000 genomes]
rs73654529	1.00[AFR][1000 genomes]
rs73654531	1.00[AFR][1000 genomes]
rs73654532	1.00[AFR][1000 genomes]
rs73654534	0.87[AFR][1000 genomes]
rs73654535	0.87[AFR][1000 genomes]
rs73654536	0.87[AFR][1000 genomes]
rs73654537	0.87[AFR][1000 genomes]
rs73654538	0.87[AFR][1000 genomes]
rs73654540	0.87[AFR][1000 genomes]
rs73654542	1.00[AFR][1000 genomes]
rs73654543	0.87[AFR][1000 genomes]
rs73654544	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97811400-97820800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:97813000-97819600	Weak transcription	Hela-S3	cervix
3	chr9:97813000-97820600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:97813000-97873000	Weak transcription	K562	blood
5	chr9:97813400-97827200	Genic enhancers	Liver	Liver
6	chr9:97815200-97824400	Weak transcription	Thymus	Thymus
7	chr9:97816000-97823000	Enhancers	Fetal Heart	heart
8	chr9:97816400-97819000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:97816400-97820400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:97816400-97821600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:97816600-97819400	Active TSS	Aorta	Aorta
12	chr9:97816600-97820600	Enhancers	Fetal Kidney	kidney
13	chr9:97817200-97821000	Transcr. at gene 5' and 3'	A549	lung
14	chr9:97817400-97818800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:97817400-97818800	Enhancers	Fetal Brain Female	brain
16	chr9:97817400-97818800	Enhancers	Placenta	Placenta
17	chr9:97817400-97818800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr9:97817400-97819000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:97817400-97819000	Enhancers	Fetal Brain Male	brain
20	chr9:97817400-97821200	Enhancers	Primary hematopoietic stem cells	blood
21	chr9:97817400-97821400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr9:97817400-97821600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:97817400-97821800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:97817600-97818800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:97817600-97818800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:97817600-97818800	Enhancers	Small Intestine	intestine
27	chr9:97817600-97819000	Flanking Active TSS	Right Atrium	heart
28	chr9:97817600-97819600	Flanking Active TSS	HSMMtube	muscle
29	chr9:97817600-97819800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr9:97817600-97819800	Flanking Active TSS	NH-A	brain
31	chr9:97817600-97819800	Flanking Active TSS	NHDF-Ad	bronchial
32	chr9:97817600-97820000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:97817600-97820000	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr9:97817600-97821000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:97817600-97821000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr9:97817600-97826000	Genic enhancers	HepG2	liver
37	chr9:97817600-97826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:97817800-97818800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:97817800-97818800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:97817800-97818800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:97817800-97818800	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr9:97817800-97818800	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr9:97817800-97819000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:97817800-97819000	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr9:97817800-97819000	Flanking Active TSS	Psoas Muscle	Psoas
46	chr9:97817800-97819400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr9:97817800-97819800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr9:97817800-97819800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:97817800-97819800	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr9:97817800-97820000	Enhancers	H1 Cell Line	embryonic stem cell

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