Variant report

Variant	rs56138798
Chromosome Location	chr3:43005532-43005533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55788355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829301	1.00[AMR][1000 genomes]
rs73832404	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832412	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832415	1.00[EUR][1000 genomes]
rs73832416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
2	chr3:42978600-43020400	Weak transcription	Ovary	ovary
3	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
4	chr3:42994600-43006000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:43003600-43005600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:43003600-43005600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:43003600-43005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:43003600-43006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:43003600-43011400	Weak transcription	Liver	Liver
10	chr3:43003600-43011600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:43003800-43005600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:43003800-43015400	Weak transcription	Fetal Stomach	stomach
13	chr3:43005200-43007600	Enhancers	Primary T cells from cord blood	blood
14	chr3:43005400-43007200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:43005400-43007200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:43005400-43007200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:43005400-43007200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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