Variant report

Variant	rs73832404
Chromosome Location	chr3:42949408-42949409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55788355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56138798	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829301	1.00[AMR][1000 genomes]
rs73832405	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832408	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832409	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832415	1.00[EUR][1000 genomes]
rs73832416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42948400-42950000	Weak transcription	Aorta	Aorta
2	chr3:42948400-42954600	Weak transcription	NH-A	brain
3	chr3:42948600-42949600	Enhancers	Right Ventricle	heart
4	chr3:42948600-42949800	Enhancers	Fetal Brain Male	brain
5	chr3:42948600-42951000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:42948600-42951000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:42948600-42951800	Weak transcription	Fetal Kidney	kidney
8	chr3:42948600-42952000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:42948600-42952200	Weak transcription	Psoas Muscle	Psoas
10	chr3:42948600-42952200	Weak transcription	Osteobl	bone
11	chr3:42948600-42954200	Weak transcription	Small Intestine	intestine
12	chr3:42948600-42955200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:42948600-42955600	Weak transcription	NHDF-Ad	bronchial
14	chr3:42948800-42949600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:42948800-42949600	Weak transcription	Fetal Intestine Large	intestine
16	chr3:42948800-42950000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:42948800-42950000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:42948800-42951800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:42948800-42952000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:42948800-42952000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:42948800-42952000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:42948800-42952200	Weak transcription	Gastric	stomach
23	chr3:42948800-42954600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:42948800-42954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:42949000-42949600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:42949000-42949600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:42949000-42949600	Weak transcription	Brain Germinal Matrix	brain
28	chr3:42949000-42949600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:42949000-42949600	Weak transcription	Esophagus	oesophagus
30	chr3:42949000-42949600	Weak transcription	Placenta	Placenta
31	chr3:42949000-42949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:42949000-42949800	Weak transcription	Adipose Nuclei	Adipose
33	chr3:42949000-42950200	Weak transcription	Colonic Mucosa	Colon
34	chr3:42949000-42951000	Weak transcription	Spleen	Spleen
35	chr3:42949000-42951200	Weak transcription	Pancreas	Pancrea
36	chr3:42949000-42951400	Weak transcription	Brain Anterior Caudate	brain
37	chr3:42949000-42951600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:42949000-42951800	Weak transcription	Left Ventricle	heart
39	chr3:42949000-42952000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:42949000-42952000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:42949000-42952400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:42949000-42954400	Weak transcription	Stomach Mucosa	stomach
43	chr3:42949000-42954600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:42949200-42949600	Weak transcription	Brain Angular Gyrus	brain
45	chr3:42949200-42949600	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:42949200-42949600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:42949200-42949600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:42949200-42949600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:42949200-42949600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:42949200-42949800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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