Variant report

Variant	rs73832405
Chromosome Location	chr3:42957250-42957251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55788355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56138798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829301	1.00[AMR][1000 genomes]
rs73832404	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832412	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832415	1.00[EUR][1000 genomes]
rs73832416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42951800-42959000	ZNF genes & repeats	Fetal Lung	lung
2	chr3:42952000-42958800	ZNF genes & repeats	Fetal Muscle Leg	muscle
3	chr3:42953000-42958800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
4	chr3:42954000-42957800	ZNF genes & repeats	Fetal Kidney	kidney
5	chr3:42954400-42957400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:42954400-42957400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:42954400-42957400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr3:42954400-42957400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
9	chr3:42954400-42957800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:42954400-42957800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:42954400-42958400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr3:42954400-42958800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr3:42954400-42959000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr3:42954400-42959200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr3:42954400-42959400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:42954400-42960200	ZNF genes & repeats	Liver	Liver
17	chr3:42954400-42960400	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr3:42954400-42960400	ZNF genes & repeats	Brain Germinal Matrix	brain
19	chr3:42954600-42957400	ZNF genes & repeats	Fetal Heart	heart
20	chr3:42954600-42957400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
21	chr3:42954600-42957600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:42954600-42957600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:42954600-42959000	ZNF genes & repeats	Fetal Brain Female	brain
24	chr3:42954800-42958000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:42955200-42957400	ZNF genes & repeats	Brain Angular Gyrus	brain
26	chr3:42955200-42957400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr3:42956800-42958200	Strong transcription	Placenta	Placenta
28	chr3:42956800-42958200	Weak transcription	Pancreas	Pancrea
29	chr3:42956800-42958600	Weak transcription	Esophagus	oesophagus
30	chr3:42957000-42958200	Weak transcription	Ovary	ovary
31	chr3:42957000-42960000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:42957200-42958400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links