Variant report

Variant	rs73832414
Chromosome Location	chr3:43020203-43020204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr3:43020087-43021455	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
FAM198A	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55788355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56138798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829301	1.00[AMR][1000 genomes]
rs73832404	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832412	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832415	1.00[EUR][1000 genomes]
rs73832416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978600-43020400	Weak transcription	Ovary	ovary
2	chr3:43016000-43020400	Weak transcription	Pancreas	Pancrea
3	chr3:43019600-43020400	Enhancers	Liver	Liver
4	chr3:43019800-43020600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:43020000-43020400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:43020000-43020400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:43020000-43020400	Bivalent Enhancer	Fetal Stomach	stomach
8	chr3:43020000-43020600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:43020000-43020600	Enhancers	Placenta	Placenta
10	chr3:43020000-43020600	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr3:43020200-43020400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr3:43020200-43020400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:43020200-43020400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:43020200-43020400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:43020200-43020400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:43020200-43020400	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:43020200-43020400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:43020200-43020400	Enhancers	Brain Angular Gyrus	brain
19	chr3:43020200-43020400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
20	chr3:43020200-43020400	Enhancers	Brain Substantia Nigra	brain
21	chr3:43020200-43020400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
22	chr3:43020200-43020400	Bivalent Enhancer	Fetal Heart	heart
23	chr3:43020200-43020400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr3:43020200-43020400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:43020200-43020600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr3:43020200-43020600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr3:43020200-43020600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr3:43020200-43020600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
29	chr3:43020200-43020600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr3:43020200-43020600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr3:43020200-43020600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:43020200-43020600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
33	chr3:43020200-43020800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:43020200-43021400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr3:43020200-43022000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr3:43020200-43022200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr3:43020200-43022200	Active TSS	Rectal Smooth Muscle	rectum

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