Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502781	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12457400	0.85[AMR][1000 genomes]
rs12458223	0.85[AMR][1000 genomes]
rs1461704	0.86[EUR][1000 genomes]
rs17609320	0.88[AMR][1000 genomes]
rs17610303	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7228908	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs722959	0.82[AMR][1000 genomes]
rs722960	0.82[AMR][1000 genomes]
rs7230352	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7240321	0.86[EUR][1000 genomes]
rs72899316	0.85[AMR][1000 genomes]
rs72899317	0.88[AMR][1000 genomes]
rs72899323	0.92[AMR][1000 genomes]
rs72899324	0.92[AMR][1000 genomes]
rs72901312	0.82[AMR][1000 genomes]
rs72901320	0.85[AMR][1000 genomes]
rs72901342	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72901344	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901345	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901348	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72901351	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72901355	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901367	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901374	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901375	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72901378	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9967444	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv1059553	chr18:39828781-39872695	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39871200-39874600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr18:39871200-39874600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:39871600-39874400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: