Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10502781	0.87[EUR][1000 genomes]
rs10502782	0.97[ASN][1000 genomes]
rs10502783	1.00[ASN][1000 genomes]
rs11082269	1.00[ASN][1000 genomes]
rs11874061	1.00[ASN][1000 genomes]
rs12604128	1.00[ASN][1000 genomes]
rs12967992	0.86[ASN][1000 genomes]
rs1381344	0.84[ASN][1000 genomes]
rs1381345	1.00[ASN][1000 genomes]
rs1461704	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17610303	0.89[EUR][1000 genomes]
rs4890232	0.81[ASN][1000 genomes]
rs56145428	0.86[EUR][1000 genomes]
rs7228908	0.87[EUR][1000 genomes]
rs7230352	0.86[EUR][1000 genomes]
rs7235200	1.00[ASN][1000 genomes]
rs7240321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901342	0.85[EUR][1000 genomes]
rs72901344	0.89[EUR][1000 genomes]
rs72901345	0.86[EUR][1000 genomes]
rs72901351	0.85[EUR][1000 genomes]
rs72901355	0.87[EUR][1000 genomes]
rs72901367	0.89[EUR][1000 genomes]
rs72901374	0.86[EUR][1000 genomes]
rs72901375	0.85[EUR][1000 genomes]
rs72901378	0.86[EUR][1000 genomes]
rs8089535	1.00[ASN][1000 genomes]
rs9946713	0.85[ASN][1000 genomes]
rs9955570	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39883600-39887800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:39885800-39886400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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