Variant report
| Variant | rs7228908 |
|---|---|
| Chromosome Location | chr18:39883104-39883105 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10502781 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12457400 | 0.82[AMR][1000 genomes] |
| rs12458223 | 0.82[AMR][1000 genomes] |
| rs1461704 | 0.87[EUR][1000 genomes] |
| rs17609320 | 0.85[AMR][1000 genomes] |
| rs17610303 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56145428 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7230352 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7240321 | 0.87[EUR][1000 genomes] |
| rs72899316 | 0.82[AMR][1000 genomes] |
| rs72899317 | 0.85[AMR][1000 genomes] |
| rs72899323 | 0.88[AMR][1000 genomes] |
| rs72899324 | 0.88[AMR][1000 genomes] |
| rs72901320 | 0.82[AMR][1000 genomes] |
| rs72901342 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72901344 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72901345 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72901348 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72901351 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72901355 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72901367 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72901374 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72901375 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72901378 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9967444 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949609 | chr18:39126941-40070286 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1059409 | chr18:39711099-40139446 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1063343 | chr18:39760943-39898498 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:39883000-39883600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
