Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10502781	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1461704	0.87[EUR][1000 genomes]
rs17610303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56145428	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7228908	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7230352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7240321	0.87[EUR][1000 genomes]
rs72899323	0.81[AMR][1000 genomes]
rs72899324	0.81[AMR][1000 genomes]
rs72901342	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901344	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901345	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901348	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72901351	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72901378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9967444	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39879000-39879600	Active TSS	Brain Angular Gyrus	brain
2	chr18:39879000-39879600	Active TSS	Brain Cingulate Gyrus	brain
3	chr18:39879000-39879600	Enhancers	Fetal Stomach	stomach
4	chr18:39879000-39879800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr18:39879000-39879800	Flanking Active TSS	Fetal Brain Female	brain
6	chr18:39879200-39879600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:39879200-39879600	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr18:39879200-39879600	Enhancers	Fetal Muscle Trunk	muscle
9	chr18:39879200-39879600	Enhancers	Fetal Muscle Leg	muscle
10	chr18:39879400-39879600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:39879400-39879600	Enhancers	Aorta	Aorta
12	chr18:39879400-39879600	Enhancers	Brain Hippocampus Middle	brain
13	chr18:39879400-39879600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr18:39879400-39879600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr18:39879400-39879600	Enhancers	Brain Substantia Nigra	brain
16	chr18:39879400-39879600	Enhancers	Colon Smooth Muscle	Colon
17	chr18:39879400-39879600	Enhancers	Rectal Smooth Muscle	rectum
18	chr18:39879400-39879600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr18:39879400-39879600	Active TSS	Stomach Smooth Muscle	stomach
20	chr18:39879400-39879800	Enhancers	Fetal Kidney	kidney
21	chr18:39879400-39880000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:39879400-39880400	Enhancers	Fetal Brain Male	brain

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