Variant report

Variant	rs56162336
Chromosome Location	chr3:100256299-100256300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56393938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57755171	1.00[EUR][1000 genomes]
rs58548186	1.00[EUR][1000 genomes]
rs58681466	1.00[EUR][1000 genomes]
rs59488617	1.00[EUR][1000 genomes]
rs61153044	1.00[EUR][1000 genomes]
rs6441330	1.00[EUR][1000 genomes]
rs6765306	1.00[EUR][1000 genomes]
rs6767288	1.00[EUR][1000 genomes]
rs6804450	1.00[EUR][1000 genomes]
rs72941501	1.00[EUR][1000 genomes]
rs72943211	1.00[EUR][1000 genomes]
rs72943217	1.00[EUR][1000 genomes]
rs7430040	1.00[EUR][1000 genomes]
rs9866409	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100238000-100265400	Weak transcription	HSMMtube	muscle
2	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:100242400-100265000	Weak transcription	HepG2	liver
4	chr3:100242400-100268000	Weak transcription	Ovary	ovary
5	chr3:100244600-100261400	Weak transcription	Fetal Lung	lung
6	chr3:100244800-100257800	Weak transcription	Spleen	Spleen
7	chr3:100244800-100267000	Weak transcription	HSMM	muscle
8	chr3:100251000-100257400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:100251800-100257000	Enhancers	Hela-S3	cervix
10	chr3:100253200-100257400	Enhancers	HMEC	breast
11	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
13	chr3:100254000-100269400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:100254200-100257400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:100255000-100256600	Enhancers	Pancreas	Pancrea
16	chr3:100255000-100274800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:100255200-100256400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:100255200-100258600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:100255400-100256600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:100255400-100256800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:100255600-100257000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:100255600-100266600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:100255800-100256800	Strong transcription	Fetal Stomach	stomach
24	chr3:100255800-100267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:100256200-100256400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:100256200-100257000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:100256200-100257400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links