Variant report

Variant	rs61153044
Chromosome Location	chr3:100145925-100145926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100119810..100121905-chr3:100144958..100146627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

rs_ID	r²[population]
rs56162336	1.00[EUR][1000 genomes]
rs56393938	1.00[EUR][1000 genomes]
rs57755171	1.00[EUR][1000 genomes]
rs58548186	1.00[EUR][1000 genomes]
rs58681466	1.00[EUR][1000 genomes]
rs59488617	1.00[EUR][1000 genomes]
rs6441330	1.00[EUR][1000 genomes]
rs6765306	1.00[EUR][1000 genomes]
rs6767288	1.00[EUR][1000 genomes]
rs6804450	1.00[EUR][1000 genomes]
rs72941501	1.00[EUR][1000 genomes]
rs72943211	1.00[EUR][1000 genomes]
rs72943217	1.00[EUR][1000 genomes]
rs7430040	1.00[EUR][1000 genomes]
rs9866409	1.00[EUR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
2	chr3:100127600-100146200	Weak transcription	Ovary	ovary
3	chr3:100127600-100148200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
5	chr3:100132000-100148200	Weak transcription	Aorta	Aorta
6	chr3:100132200-100151600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:100140000-100148000	Weak transcription	Right Atrium	heart
9	chr3:100143400-100148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:100144000-100147600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:100144000-100151800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:100144200-100146400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
14	chr3:100144600-100148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:100145000-100148000	Weak transcription	Placenta	Placenta
16	chr3:100145200-100146400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:100145200-100147400	Enhancers	Fetal Lung	lung
18	chr3:100145200-100156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:100145200-100162400	Weak transcription	HepG2	liver
20	chr3:100145400-100148000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:100145400-100148000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:100145400-100148000	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:100145400-100149200	Weak transcription	Adipose Nuclei	Adipose
24	chr3:100145600-100146200	Enhancers	Liver	Liver
25	chr3:100145600-100146200	Weak transcription	K562	blood
26	chr3:100145800-100146400	Weak transcription	Fetal Intestine Small	intestine

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