Variant report

Variant	rs56162945
Chromosome Location	chr19:37113632-37113633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55837819	1.00[AMR][1000 genomes]
rs55858494	1.00[AMR][1000 genomes]
rs55981753	1.00[AMR][1000 genomes]
rs56261527	1.00[AMR][1000 genomes]
rs56890549	1.00[AMR][1000 genomes]
rs57422489	1.00[AMR][1000 genomes]
rs58403474	1.00[AMR][1000 genomes]
rs61082544	1.00[AMR][1000 genomes]
rs61481244	1.00[AMR][1000 genomes]
rs73929123	1.00[AMR][1000 genomes]
rs73929124	1.00[AMR][1000 genomes]
rs73929127	1.00[AMR][1000 genomes]
rs73929129	1.00[AMR][1000 genomes]
rs73929134	1.00[AMR][1000 genomes]
rs73929170	1.00[AMR][1000 genomes]
rs73929171	1.00[AMR][1000 genomes]
rs73929178	1.00[AMR][1000 genomes]
rs73931636	1.00[AMR][1000 genomes]
rs73931639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37118200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37098200-37120400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:37102000-37118600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
6	chr19:37103000-37118600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:37104400-37114200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
8	chr19:37104400-37118400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr19:37104400-37125600	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chr19:37105600-37115200	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr19:37106400-37115400	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr19:37106800-37114400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
15	chr19:37107000-37114400	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr19:37107000-37114600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr19:37107000-37116000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr19:37107000-37118600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
19	chr19:37107000-37120400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr19:37107000-37120400	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr19:37107000-37125400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr19:37107000-37134800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr19:37107200-37114400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr19:37107200-37119800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:37107400-37117800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr19:37107400-37118400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:37107600-37119600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
29	chr19:37107800-37118400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr19:37107800-37134600	ZNF genes & repeats	Brain Anterior Caudate	brain
31	chr19:37108000-37115800	ZNF genes & repeats	Fetal Lung	lung
32	chr19:37108200-37114400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
33	chr19:37108200-37114400	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr19:37108400-37114200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr19:37108400-37118400	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr19:37108400-37119800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr19:37108600-37114200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr19:37109200-37119800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr19:37109200-37120400	ZNF genes & repeats	Dnd41	blood
40	chr19:37109600-37118400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr19:37109800-37114600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:37109800-37114600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr19:37110000-37116000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr19:37110200-37114600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:37111000-37114600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr19:37111000-37114600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr19:37111000-37114600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chr19:37111200-37114200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr19:37111200-37114200	ZNF genes & repeats	Fetal Brain Male	brain

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