Variant report

Variant	rs73929134
Chromosome Location	chr19:37145716-37145717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55837819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55858494	1.00[AMR][1000 genomes]
rs55981753	1.00[AMR][1000 genomes]
rs56162945	1.00[AMR][1000 genomes]
rs56261527	1.00[AMR][1000 genomes]
rs56890549	1.00[AMR][1000 genomes]
rs57422489	1.00[AMR][1000 genomes]
rs58403474	1.00[AMR][1000 genomes]
rs61082544	1.00[AMR][1000 genomes]
rs61481244	1.00[AMR][1000 genomes]
rs73929123	1.00[AMR][1000 genomes]
rs73929124	1.00[AMR][1000 genomes]
rs73929127	1.00[AMR][1000 genomes]
rs73929129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73929170	1.00[AMR][1000 genomes]
rs73929171	1.00[AMR][1000 genomes]
rs73929178	1.00[AMR][1000 genomes]
rs73931636	1.00[AMR][1000 genomes]
rs73931639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
4	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:37124800-37155600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:37126200-37156200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:37127200-37151000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:37128200-37150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:37128600-37149600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr19:37128800-37156200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:37134600-37157000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:37135200-37156200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:37135600-37146600	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr19:37135600-37150000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:37135800-37148000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr19:37135800-37150000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:37135800-37150800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:37135800-37156200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr19:37135800-37156400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr19:37136000-37150800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:37136000-37151600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
23	chr19:37136000-37152200	ZNF genes & repeats	Fetal Brain Female	brain
24	chr19:37136000-37152400	ZNF genes & repeats	A549	lung
25	chr19:37136400-37152200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr19:37137200-37150400	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr19:37137200-37151200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr19:37138200-37149200	Strong transcription	Osteobl	bone
29	chr19:37140200-37146200	Weak transcription	Stomach Mucosa	stomach
30	chr19:37141400-37150800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr19:37141400-37151000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr19:37141400-37151000	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr19:37141400-37151200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr19:37141800-37146000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:37141800-37148600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:37141800-37150200	ZNF genes & repeats	Ovary	ovary
37	chr19:37141800-37150600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr19:37141800-37150800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr19:37142200-37145800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
40	chr19:37142200-37147800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr19:37142400-37145800	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr19:37142400-37146000	ZNF genes & repeats	Brain Substantia Nigra	brain
43	chr19:37142400-37149200	Strong transcription	NH-A	brain
44	chr19:37142600-37147000	Strong transcription	Fetal Brain Male	brain
45	chr19:37142600-37148400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
46	chr19:37142600-37150000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr19:37142600-37156000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr19:37142800-37146800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
49	chr19:37142800-37147200	Weak transcription	HMEC	breast
50	chr19:37142800-37148000	ZNF genes & repeats	Psoas Muscle	Psoas

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