Variant report

Variant	rs55858494
Chromosome Location	chr19:37255140-37255141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37248355..37251214-chr19:37254727..37257634,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55837819	1.00[AMR][1000 genomes]
rs55981753	1.00[AMR][1000 genomes]
rs56162945	1.00[AMR][1000 genomes]
rs56261527	1.00[AMR][1000 genomes]
rs56890549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57422489	1.00[AMR][1000 genomes]
rs58403474	1.00[AMR][1000 genomes]
rs61082544	1.00[AMR][1000 genomes]
rs61481244	1.00[AMR][1000 genomes]
rs73929123	1.00[AMR][1000 genomes]
rs73929124	1.00[AMR][1000 genomes]
rs73929127	1.00[AMR][1000 genomes]
rs73929129	1.00[AMR][1000 genomes]
rs73929134	1.00[AMR][1000 genomes]
rs73929170	1.00[AMR][1000 genomes]
rs73929171	1.00[AMR][1000 genomes]
rs73929178	1.00[AMR][1000 genomes]
rs73931636	1.00[AMR][1000 genomes]
rs73931639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv470139	chr19:37171201-37264190	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv911649	chr19:37203249-37257192	ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
15	nsv911650	chr19:37241141-37331614	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	esv1829205	chr19:37252164-37285622	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a
17	nsv963041	chr19:37252526-37264177	Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37194600-37258800	ZNF genes & repeats	Liver	Liver
2	chr19:37234000-37262400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37235000-37256200	ZNF genes & repeats	Dnd41	blood
4	chr19:37235000-37257800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:37235000-37261200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:37235200-37256000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:37235200-37256200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:37235200-37261600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:37235200-37262200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr19:37235200-37262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:37235400-37256200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:37235400-37256400	ZNF genes & repeats	Fetal Lung	lung
13	chr19:37236200-37256200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:37236400-37258600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
15	chr19:37238600-37257200	ZNF genes & repeats	Ovary	ovary
16	chr19:37241600-37258400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
17	chr19:37242400-37256000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:37243600-37257200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr19:37245600-37261600	ZNF genes & repeats	Fetal Stomach	stomach
20	chr19:37246000-37255400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr19:37249200-37261800	Weak transcription	HUVEC	blood vessel
22	chr19:37250200-37262000	Weak transcription	Stomach Mucosa	stomach
23	chr19:37250400-37257400	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr19:37250400-37262000	Weak transcription	Psoas Muscle	Psoas
25	chr19:37251000-37257200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr19:37252000-37256200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:37252200-37261800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr19:37252600-37255600	Weak transcription	Brain Anterior Caudate	brain
29	chr19:37252600-37255600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr19:37252600-37255800	Weak transcription	Gastric	stomach
31	chr19:37252600-37255800	Weak transcription	K562	blood
32	chr19:37252800-37255200	Weak transcription	Aorta	Aorta
33	chr19:37252800-37261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr19:37253200-37255200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr19:37253200-37260200	Weak transcription	Fetal Kidney	kidney
36	chr19:37253200-37261800	Weak transcription	Colon Smooth Muscle	Colon
37	chr19:37253400-37255400	Weak transcription	Osteobl	bone
38	chr19:37253400-37255600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr19:37253400-37260400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr19:37253400-37261800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr19:37253400-37261800	Weak transcription	Brain Hippocampus Middle	brain
42	chr19:37253400-37261800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr19:37253600-37255200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr19:37253800-37255200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr19:37253800-37255200	Weak transcription	Primary T cells from cord blood	blood
46	chr19:37253800-37255200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr19:37253800-37255200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:37253800-37255200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr19:37253800-37255400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr19:37253800-37255800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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