Variant report

Variant	rs56261527
Chromosome Location	chr19:37104378-37104379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55837819	1.00[AMR][1000 genomes]
rs55858494	1.00[AMR][1000 genomes]
rs55981753	1.00[AMR][1000 genomes]
rs56162945	1.00[AMR][1000 genomes]
rs56890549	1.00[AMR][1000 genomes]
rs57422489	1.00[AMR][1000 genomes]
rs58403474	1.00[AMR][1000 genomes]
rs61082544	1.00[AMR][1000 genomes]
rs61481244	1.00[AMR][1000 genomes]
rs73929123	1.00[AMR][1000 genomes]
rs73929124	1.00[AMR][1000 genomes]
rs73929127	1.00[AMR][1000 genomes]
rs73929129	1.00[AMR][1000 genomes]
rs73929134	1.00[AMR][1000 genomes]
rs73929170	1.00[AMR][1000 genomes]
rs73929171	1.00[AMR][1000 genomes]
rs73929178	1.00[AMR][1000 genomes]
rs73931636	1.00[AMR][1000 genomes]
rs73931639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37096800-37110000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:37097000-37104400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37097000-37106000	Weak transcription	Fetal Thymus	thymus
4	chr19:37097000-37106800	Weak transcription	Stomach Mucosa	stomach
5	chr19:37097000-37107000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr19:37097000-37107000	Weak transcription	Small Intestine	intestine
7	chr19:37097000-37107400	Weak transcription	HUVEC	blood vessel
8	chr19:37097000-37107800	Weak transcription	Gastric	stomach
9	chr19:37097000-37112600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:37097200-37104400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:37097200-37104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr19:37097200-37105600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr19:37097200-37109600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:37097200-37110000	Weak transcription	NHLF	lung
15	chr19:37097400-37105200	Weak transcription	HepG2	liver
16	chr19:37098000-37104600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr19:37098000-37106200	Strong transcription	Brain Hippocampus Middle	brain
18	chr19:37098000-37118200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:37098200-37108400	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr19:37098200-37120400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:37098400-37105000	ZNF genes & repeats	Liver	Liver
23	chr19:37098400-37107400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr19:37098600-37105200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr19:37098600-37105600	Strong transcription	Brain Angular Gyrus	brain
26	chr19:37098600-37106200	Strong transcription	Ovary	ovary
27	chr19:37098800-37105000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:37098800-37106000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr19:37098800-37108200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr19:37099000-37105600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:37099000-37109200	Strong transcription	Dnd41	blood
32	chr19:37099200-37105800	Strong transcription	Stomach Smooth Muscle	stomach
33	chr19:37099200-37110000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr19:37099600-37105800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:37099600-37108400	Strong transcription	Fetal Muscle Leg	muscle
36	chr19:37100200-37107600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr19:37100800-37105000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr19:37101000-37107000	Weak transcription	Aorta	Aorta
39	chr19:37101000-37107000	Weak transcription	Pancreas	Pancrea
40	chr19:37101000-37107000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr19:37101400-37112800	Weak transcription	Osteobl	bone
42	chr19:37101800-37111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:37102000-37105200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr19:37102000-37105600	Weak transcription	Left Ventricle	heart
45	chr19:37102000-37105600	Weak transcription	Psoas Muscle	Psoas
46	chr19:37102000-37106800	Weak transcription	HSMMtube	muscle
47	chr19:37102000-37118600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
48	chr19:37102200-37104400	Weak transcription	Fetal Stomach	stomach
49	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
50	chr19:37102600-37104400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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