Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30922699..30925574-chr22:30981995..30984625,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100029	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10428025	0.96[EUR][1000 genomes]
rs11914198	1.00[EUR][1000 genomes]
rs12170920	0.96[EUR][1000 genomes]
rs55674628	0.91[EUR][1000 genomes]
rs5749115	0.96[EUR][1000 genomes]
rs5749117	0.96[EUR][1000 genomes]
rs5753180	0.96[EUR][1000 genomes]
rs5753181	0.96[EUR][1000 genomes]
rs58750696	0.85[EUR][1000 genomes]
rs59041044	0.87[EUR][1000 genomes]
rs59571413	0.92[EUR][1000 genomes]
rs5997679	1.00[EUR][1000 genomes]
rs5997681	1.00[EUR][1000 genomes]
rs60874034	0.96[EUR][1000 genomes]
rs61062709	1.00[EUR][1000 genomes]
rs61154368	0.96[EUR][1000 genomes]
rs61739203	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61742115	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61744139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61746412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7286285	0.84[EUR][1000 genomes]
rs7286703	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7287647	1.00[EUR][1000 genomes]
rs7289242	1.00[EUR][1000 genomes]
rs7289280	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7289848	0.96[EUR][1000 genomes]
rs7290074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7292475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394239	1.00[EUR][1000 genomes]
rs8135119	0.91[EUR][1000 genomes]
rs8135296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8138975	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30914400-30933400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:30918400-30926600	Weak transcription	Gastric	stomach
3	chr22:30922200-30927800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:30924800-30925400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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