Variant report

Variant	rs59041044
Chromosome Location	chr22:30895880-30895881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10428025	0.83[EUR][1000 genomes]
rs11914198	0.87[EUR][1000 genomes]
rs12170920	0.83[EUR][1000 genomes]
rs56173866	0.87[EUR][1000 genomes]
rs5749115	0.83[EUR][1000 genomes]
rs5749117	0.83[EUR][1000 genomes]
rs5753180	0.83[EUR][1000 genomes]
rs5753181	0.83[EUR][1000 genomes]
rs58750696	0.81[EUR][1000 genomes]
rs59571413	0.88[EUR][1000 genomes]
rs5997679	0.87[EUR][1000 genomes]
rs5997681	0.87[EUR][1000 genomes]
rs60874034	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61062709	0.87[EUR][1000 genomes]
rs61154368	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61742115	0.87[EUR][1000 genomes]
rs61744139	0.91[EUR][1000 genomes]
rs61746412	0.91[EUR][1000 genomes]
rs7286703	0.87[EUR][1000 genomes]
rs7287647	0.87[EUR][1000 genomes]
rs7289242	0.87[EUR][1000 genomes]
rs7289280	0.87[EUR][1000 genomes]
rs7289848	0.82[EUR][1000 genomes]
rs7290074	0.87[EUR][1000 genomes]
rs7292475	0.87[EUR][1000 genomes]
rs73394239	0.87[EUR][1000 genomes]
rs8135296	0.87[EUR][1000 genomes]
rs8138975	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv3413089	chr22:30888110-30921604	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30883400-30901200	Weak transcription	A549	lung
2	chr22:30891800-30901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:30894000-30898200	Weak transcription	HepG2	liver
4	chr22:30895800-30898200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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