Variant report
| Variant | rs61062709 |
|---|---|
| Chromosome Location | chr22:30917809-30917810 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:30906993..30909808-chr22:30916517..30918667,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10428025 | 0.96[EUR][1000 genomes] |
| rs11914198 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12170920 | 0.96[EUR][1000 genomes] |
| rs55674628 | 0.91[EUR][1000 genomes] |
| rs56173866 | 1.00[EUR][1000 genomes] |
| rs5749115 | 0.96[EUR][1000 genomes] |
| rs5749117 | 0.96[EUR][1000 genomes] |
| rs5753180 | 0.96[EUR][1000 genomes] |
| rs5753181 | 0.96[EUR][1000 genomes] |
| rs58750696 | 0.85[EUR][1000 genomes] |
| rs59041044 | 0.87[EUR][1000 genomes] |
| rs59571413 | 0.92[EUR][1000 genomes] |
| rs5997679 | 1.00[EUR][1000 genomes] |
| rs5997681 | 1.00[EUR][1000 genomes] |
| rs60874034 | 0.96[EUR][1000 genomes] |
| rs61154368 | 0.96[EUR][1000 genomes] |
| rs61739203 | 0.91[EUR][1000 genomes] |
| rs61742115 | 1.00[EUR][1000 genomes] |
| rs61744139 | 0.96[EUR][1000 genomes] |
| rs61746412 | 0.96[EUR][1000 genomes] |
| rs7286285 | 0.84[EUR][1000 genomes] |
| rs7286703 | 0.91[EUR][1000 genomes] |
| rs7287647 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7289242 | 1.00[EUR][1000 genomes] |
| rs7289280 | 1.00[EUR][1000 genomes] |
| rs7289848 | 0.96[EUR][1000 genomes] |
| rs7290074 | 1.00[EUR][1000 genomes] |
| rs7292475 | 1.00[EUR][1000 genomes] |
| rs73394239 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8135119 | 0.91[EUR][1000 genomes] |
| rs8135296 | 1.00[EUR][1000 genomes] |
| rs8138975 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829171 | chr22:30598030-31043578 | Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 3 | esv3413089 | chr22:30888110-30921604 | ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:30910200-30922000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr22:30914400-30933400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
