Variant report

Variant	rs7286703
Chromosome Location	chr22:30859127-30859128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10428025	0.87[EUR][1000 genomes]
rs11914198	0.91[EUR][1000 genomes]
rs12170920	0.87[EUR][1000 genomes]
rs55674628	0.83[EUR][1000 genomes]
rs56173866	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs5749115	0.87[EUR][1000 genomes]
rs5749117	0.87[EUR][1000 genomes]
rs5753180	0.87[EUR][1000 genomes]
rs5753181	0.87[EUR][1000 genomes]
rs58750696	0.85[EUR][1000 genomes]
rs59041044	0.87[EUR][1000 genomes]
rs59571413	0.92[EUR][1000 genomes]
rs5997679	0.91[EUR][1000 genomes]
rs5997681	0.91[EUR][1000 genomes]
rs60874034	0.96[EUR][1000 genomes]
rs61062709	0.91[EUR][1000 genomes]
rs61154368	0.96[EUR][1000 genomes]
rs61739203	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61742115	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61744139	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61746412	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7287647	0.91[EUR][1000 genomes]
rs7289242	0.91[EUR][1000 genomes]
rs7289280	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7289848	0.87[EUR][1000 genomes]
rs7290074	0.91[EUR][1000 genomes]
rs7292475	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73394239	0.91[EUR][1000 genomes]
rs8135119	0.83[EUR][1000 genomes]
rs8135296	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8138975	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv459870	chr22:30836313-30868418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv588886	chr22:30836313-30868418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30857800-30867600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:30858000-30859400	Enhancers	Placenta	Placenta
3	chr22:30858200-30866800	Weak transcription	Liver	Liver
4	chr22:30858400-30859600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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