Variant report

Variant	rs56174731
Chromosome Location	chr11:75678098-75678099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75663693..75667116-chr11:75675374..75678918,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55758113	1.00[AMR][1000 genomes]
rs55916175	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55984423	0.85[AMR][1000 genomes]
rs56709863	1.00[AMR][1000 genomes]
rs58442571	1.00[AMR][1000 genomes]
rs58700432	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330958	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337469	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59790182	1.00[AMR][1000 genomes]
rs60012502	1.00[AMR][1000 genomes]
rs60178265	1.00[AMR][1000 genomes]
rs60331805	1.00[AMR][1000 genomes]
rs60369507	1.00[AMR][1000 genomes]
rs60594722	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61338611	1.00[AMR][1000 genomes]
rs7119278	1.00[AMR][1000 genomes]
rs73491754	0.85[AMR][1000 genomes]
rs73491770	0.85[AMR][1000 genomes]
rs73491786	0.85[AMR][1000 genomes]
rs73491787	1.00[AMR][1000 genomes]
rs73491790	1.00[AMR][1000 genomes]
rs73491799	1.00[AMR][1000 genomes]
rs73491800	1.00[AMR][1000 genomes]
rs73491802	1.00[AMR][1000 genomes]
rs73493917	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504506	0.85[AMR][1000 genomes]
rs73504507	0.85[AMR][1000 genomes]
rs73504509	0.85[AMR][1000 genomes]
rs73504523	0.85[AMR][1000 genomes]
rs7939821	0.85[AMR][1000 genomes]
rs7945859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:75658000-75684000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:75658800-75695400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:75663800-75682400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:75666200-75679000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
7	chr11:75672200-75694600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:75672800-75683400	Weak transcription	Liver	Liver
9	chr11:75673000-75714800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:75674400-75682400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:75674400-75682800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:75674400-75694400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:75674400-75694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:75675000-75678800	Weak transcription	Primary B cells from cord blood	blood
15	chr11:75675800-75700200	Weak transcription	Lung	lung
16	chr11:75676200-75680800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:75676800-75678400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr11:75677000-75680200	Enhancers	NHDF-Ad	bronchial
19	chr11:75677200-75679600	Enhancers	NHEK	skin
20	chr11:75677400-75678200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:75677400-75678600	Enhancers	Adipose Nuclei	Adipose
22	chr11:75677400-75679000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:75677400-75679200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:75677400-75679200	Enhancers	NH-A	brain
25	chr11:75677400-75679400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:75677400-75679600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:75677400-75679600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:75677400-75679800	Enhancers	HMEC	breast
29	chr11:75677400-75680400	Enhancers	Fetal Lung	lung
30	chr11:75677600-75678200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:75677600-75678200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:75677600-75678200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:75677600-75678200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr11:75677600-75678200	Flanking Active TSS	A549	lung
35	chr11:75677600-75678200	Enhancers	HSMM	muscle
36	chr11:75677600-75678400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:75677600-75678400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:75677600-75678400	Genic enhancers	GM12878-XiMat	blood
39	chr11:75677600-75678600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:75677600-75678800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:75677800-75678200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:75677800-75678200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:75677800-75678200	Enhancers	Brain Substantia Nigra	brain
44	chr11:75677800-75678200	Flanking Active TSS	Hela-S3	cervix
45	chr11:75677800-75678200	Flanking Active TSS	HUVEC	blood vessel
46	chr11:75677800-75678200	Flanking Active TSS	NHLF	lung
47	chr11:75677800-75678200	Flanking Active TSS	Osteobl	bone
48	chr11:75677800-75678400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:75677800-75678400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:75677800-75678400	Enhancers	Small Intestine	intestine

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