Variant report

Variant	rs73504509
Chromosome Location	chr11:75452936-75452937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12274372	1.00[AMR][1000 genomes]
rs12288807	1.00[AMR][1000 genomes]
rs12290190	0.85[AMR][1000 genomes]
rs55758113	0.85[AMR][1000 genomes]
rs55916175	0.85[AMR][1000 genomes]
rs56174731	0.85[AMR][1000 genomes]
rs56709863	0.85[AMR][1000 genomes]
rs58442571	0.85[AMR][1000 genomes]
rs58700432	0.85[AMR][1000 genomes]
rs59187373	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330958	0.85[AMR][1000 genomes]
rs59337469	0.85[AMR][1000 genomes]
rs59484939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59790182	0.85[AMR][1000 genomes]
rs60012502	0.85[AMR][1000 genomes]
rs60178265	0.85[AMR][1000 genomes]
rs60331805	0.85[AMR][1000 genomes]
rs60369507	0.85[AMR][1000 genomes]
rs60594722	0.85[AMR][1000 genomes]
rs60606258	0.87[AMR][1000 genomes]
rs60617388	0.87[AMR][1000 genomes]
rs61338611	0.85[AMR][1000 genomes]
rs7119278	0.85[AMR][1000 genomes]
rs73491787	0.85[AMR][1000 genomes]
rs73491790	0.85[AMR][1000 genomes]
rs73491799	0.85[AMR][1000 genomes]
rs73491800	0.85[AMR][1000 genomes]
rs73491802	0.85[AMR][1000 genomes]
rs73493917	0.85[AMR][1000 genomes]
rs73502474	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73504503	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504505	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504506	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945859	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75446000-75454200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:75446000-75454800	Weak transcription	Psoas Muscle	Psoas
4	chr11:75446800-75454800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:75448600-75453200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:75448800-75453800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:75450400-75453800	Weak transcription	HepG2	liver
8	chr11:75451400-75453200	Weak transcription	Stomach Mucosa	stomach
9	chr11:75452800-75456000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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