Variant report

Variant	rs59330958
Chromosome Location	chr11:75667780-75667781
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75656688..75659183-chr11:75666464..75668904,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12274372	0.85[AMR][1000 genomes]
rs12288807	0.85[AMR][1000 genomes]
rs55758113	1.00[AMR][1000 genomes]
rs55916175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55984423	0.85[AMR][1000 genomes]
rs56174731	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56709863	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58700432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59187373	0.85[AMR][1000 genomes]
rs59337469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59484939	0.85[AMR][1000 genomes]
rs59790182	1.00[AMR][1000 genomes]
rs60012502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60178265	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60331805	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60369507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60594722	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61338611	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119278	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491754	0.85[AMR][1000 genomes]
rs73491770	0.85[AMR][1000 genomes]
rs73491786	0.85[AMR][1000 genomes]
rs73491787	1.00[AMR][1000 genomes]
rs73491790	1.00[AMR][1000 genomes]
rs73491799	1.00[AMR][1000 genomes]
rs73491800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491802	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504503	0.85[AMR][1000 genomes]
rs73504505	0.85[AMR][1000 genomes]
rs73504506	0.85[AMR][1000 genomes]
rs73504507	0.85[AMR][1000 genomes]
rs73504509	0.85[AMR][1000 genomes]
rs73504523	0.85[AMR][1000 genomes]
rs7933675	0.84[AFR][1000 genomes]
rs7939821	0.85[AMR][1000 genomes]
rs7945859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:75636400-75677400	Weak transcription	Hela-S3	cervix
4	chr11:75653000-75672200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:75653200-75672200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:75655400-75671200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:75658000-75684000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:75658200-75671600	Weak transcription	Psoas Muscle	Psoas
9	chr11:75658200-75672600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:75658200-75674000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:75658200-75677400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:75658400-75670000	Weak transcription	K562	blood
13	chr11:75658400-75677600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:75658400-75677800	Weak transcription	Small Intestine	intestine
15	chr11:75658600-75678000	Weak transcription	Fetal Stomach	stomach
16	chr11:75658800-75673600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:75658800-75695400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:75659600-75677000	Weak transcription	HUVEC	blood vessel
19	chr11:75659600-75678000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:75660400-75677600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:75663800-75682400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:75665600-75677400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:75665800-75677000	Weak transcription	NHDF-Ad	bronchial
24	chr11:75665800-75677200	Weak transcription	NHEK	skin
25	chr11:75666000-75677400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:75666200-75677000	Weak transcription	A549	lung
27	chr11:75666200-75679000	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:75667000-75669800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:75667000-75669800	Weak transcription	GM12878-XiMat	blood
30	chr11:75667000-75672000	Weak transcription	Primary B cells from cord blood	blood
31	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart

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