Variant report

Variant	rs56709863
Chromosome Location	chr11:75632417-75632418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75632402..75634534-chr11:75653760..75656009,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12274372	0.85[AMR][1000 genomes]
rs12288807	0.85[AMR][1000 genomes]
rs55758113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55916175	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55984423	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56174731	1.00[AMR][1000 genomes]
rs58442571	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58700432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59187373	0.85[AMR][1000 genomes]
rs59330958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59484939	0.85[AMR][1000 genomes]
rs59790182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60012502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60178265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60331805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60369507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60594722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61338611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119278	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119400	0.89[AFR][1000 genomes]
rs73491754	0.85[AMR][1000 genomes]
rs73491770	0.85[AMR][1000 genomes]
rs73491786	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73491787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491790	1.00[AMR][1000 genomes]
rs73491799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504503	0.85[AMR][1000 genomes]
rs73504505	0.85[AMR][1000 genomes]
rs73504506	0.85[AMR][1000 genomes]
rs73504507	0.85[AMR][1000 genomes]
rs73504509	0.85[AMR][1000 genomes]
rs73504523	0.85[AMR][1000 genomes]
rs7933675	0.84[AFR][1000 genomes]
rs7939821	0.85[AMR][1000 genomes]
rs7945859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:75589600-75635800	Weak transcription	NHEK	skin
3	chr11:75603600-75657000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:75604600-75657600	Weak transcription	Fetal Thymus	thymus
5	chr11:75606400-75652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:75611200-75635800	Weak transcription	HSMM	muscle
7	chr11:75611600-75636000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:75614800-75635000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:75614800-75635800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:75614800-75636000	Weak transcription	Psoas Muscle	Psoas
11	chr11:75615400-75635800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:75615400-75635800	Weak transcription	Hela-S3	cervix
13	chr11:75615600-75635800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:75618800-75635400	Weak transcription	Left Ventricle	heart
15	chr11:75620000-75635800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:75620600-75636000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:75621600-75636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:75622600-75639000	Weak transcription	Lung	lung
19	chr11:75622800-75657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:75623800-75635800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:75625000-75636000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
23	chr11:75625200-75636200	Weak transcription	Liver	Liver
24	chr11:75625200-75642200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:75625200-75644400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:75625200-75656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:75625400-75645400	Weak transcription	Dnd41	blood
28	chr11:75625400-75657600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:75625600-75652400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:75626800-75635800	Weak transcription	NHLF	lung
31	chr11:75628000-75636000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:75629400-75633400	Enhancers	Adipose Nuclei	Adipose
33	chr11:75630200-75635800	Weak transcription	HSMMtube	muscle
34	chr11:75630400-75638000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:75630600-75632800	Weak transcription	Primary B cells from cord blood	blood
36	chr11:75630600-75635600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:75630800-75635800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:75630800-75635800	Weak transcription	Fetal Heart	heart
39	chr11:75630800-75635800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:75630800-75636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:75631000-75633600	Weak transcription	Small Intestine	intestine
42	chr11:75631000-75634600	Weak transcription	Fetal Intestine Small	intestine
43	chr11:75631000-75635000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:75631000-75635000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:75631000-75635000	Weak transcription	Fetal Lung	lung
46	chr11:75631000-75635000	Weak transcription	NHDF-Ad	bronchial
47	chr11:75631000-75635600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:75631000-75635600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:75631000-75635800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:75631000-75635800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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