Variant report

Variant	rs56176695
Chromosome Location	chr3:82403165-82403166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55744263	1.00[AMR][1000 genomes]
rs56075522	1.00[AMR][1000 genomes]
rs57866040	1.00[AMR][1000 genomes]
rs59610871	1.00[AMR][1000 genomes]
rs73841708	1.00[AMR][1000 genomes]
rs73841709	1.00[AMR][1000 genomes]
rs73841723	1.00[AMR][1000 genomes]
rs73841729	1.00[AMR][1000 genomes]
rs73841730	1.00[AMR][1000 genomes]
rs73841749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841752	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844129	1.00[AMR][1000 genomes]
rs73844134	1.00[AMR][1000 genomes]
rs73844137	1.00[AMR][1000 genomes]
rs73844140	1.00[AMR][1000 genomes]
rs73844141	1.00[AMR][1000 genomes]
rs73844143	1.00[AMR][1000 genomes]
rs73844144	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523771	chr3:82363196-82412694	Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82393200-82404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:82402200-82403400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:82402200-82403800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:82402400-82403600	Enhancers	Ovary	ovary
5	chr3:82402800-82403400	Weak transcription	Fetal Brain Female	brain
6	chr3:82402800-82404000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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