Variant report

Variant	rs59610871
Chromosome Location	chr3:82277819-82277820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55744263	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56075522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176695	1.00[AMR][1000 genomes]
rs57866040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841708	1.00[AMR][1000 genomes]
rs73841709	1.00[AMR][1000 genomes]
rs73841723	1.00[AMR][1000 genomes]
rs73841729	1.00[AMR][1000 genomes]
rs73841730	1.00[AMR][1000 genomes]
rs73841749	1.00[AMR][1000 genomes]
rs73841752	1.00[AMR][1000 genomes]
rs73844129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82275000-82278600	Weak transcription	Left Ventricle	heart
2	chr3:82277000-82278400	Enhancers	Fetal Heart	heart
3	chr3:82277600-82278400	Enhancers	Primary T cells from cord blood	blood
4	chr3:82277600-82278600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:82277600-82279400	Enhancers	Dnd41	blood
6	chr3:82277800-82278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:82277800-82278600	Enhancers	Primary B cells from cord blood	blood
8	chr3:82277800-82279200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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