Variant report

Variant	rs56182021
Chromosome Location	chr6:15955879-15955880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15953240..15956726-chr6:16129435..16131819,3	K562	blood:
2	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
3	chr6:15954951..15957430-chr6:16129209..16130717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11752012	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16877387	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935785	0.84[EUR][1000 genomes]
rs28394795	0.85[EUR][1000 genomes]
rs4716016	0.92[EUR][1000 genomes]
rs55891669	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56048155	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62388469	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459431	0.83[EUR][1000 genomes]
rs6933513	0.80[EUR][1000 genomes]
rs6941696	0.84[EUR][1000 genomes]
rs6942060	0.84[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:15951600-15957800	Weak transcription	Gastric	stomach
7	chr6:15953200-15956600	Weak transcription	Pancreas	Pancrea
8	chr6:15953600-15956600	Weak transcription	Lung	lung
9	chr6:15953800-15956000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:15953800-15956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:15954000-15956000	Weak transcription	Fetal Lung	lung
12	chr6:15954000-15956400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:15954000-15956400	Weak transcription	Liver	Liver
14	chr6:15954000-15956400	Weak transcription	Fetal Kidney	kidney
15	chr6:15954000-15956600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:15954200-15956000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:15954200-15956000	Weak transcription	Right Atrium	heart
21	chr6:15954200-15956400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:15954200-15956400	Weak transcription	Fetal Stomach	stomach
23	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
25	chr6:15954400-15956000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:15954400-15956200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:15954400-15956400	Weak transcription	HUVEC	blood vessel
28	chr6:15954400-15956600	Weak transcription	Placenta	Placenta
29	chr6:15954400-15956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:15954800-15956000	Weak transcription	Fetal Heart	heart
31	chr6:15955600-15958000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:15955600-15958000	Enhancers	Fetal Intestine Small	intestine
33	chr6:15955600-15959000	Enhancers	K562	blood
34	chr6:15955800-15956400	Enhancers	Duodenum Mucosa	Duodenum
35	chr6:15955800-15956600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:15955800-15958200	Enhancers	Fetal Intestine Large	intestine

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