Variant report

Variant	rs1935785
Chromosome Location	chr6:15950818-15950819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15941449..15944936-chr6:15948598..15951419,3	K562	blood:
2	chr6:15942335..15943923-chr6:15950416..15952938,2	MCF-7	breast:
3	chr6:15950314..15954724-chr6:15994866..15997380,4	K562	blood:
4	chr6:15948810..15954087-chr6:16127732..16131225,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232947	Chromatin interaction
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1418671	0.91[EUR][1000 genomes]
rs16877387	0.82[EUR][1000 genomes]
rs2103644	0.89[EUR][1000 genomes]
rs28394795	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716012	0.90[EUR][1000 genomes]
rs4716016	0.86[EUR][1000 genomes]
rs55702195	0.81[EUR][1000 genomes]
rs55891669	0.84[EUR][1000 genomes]
rs56048155	0.84[EUR][1000 genomes]
rs56182021	0.84[EUR][1000 genomes]
rs58093807	0.89[EUR][1000 genomes]
rs62388469	0.83[EUR][1000 genomes]
rs6459431	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6900771	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908481	0.80[EUR][1000 genomes]
rs6933513	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941696	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6942060	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296994	0.89[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15936400-15951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15944400-15951000	Weak transcription	Gastric	stomach
3	chr6:15947200-15952600	Weak transcription	Right Atrium	heart
4	chr6:15949000-15951000	Enhancers	Fetal Intestine Small	intestine
5	chr6:15949200-15951000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:15949200-15951000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:15949200-15951400	Enhancers	Fetal Kidney	kidney
8	chr6:15949400-15951000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:15949600-15951400	Enhancers	Placenta	Placenta
10	chr6:15949600-15952000	Weak transcription	Fetal Lung	lung
11	chr6:15949800-15951800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:15949800-15952200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:15949800-15952200	Weak transcription	Right Ventricle	heart
14	chr6:15949800-15953400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:15949800-15953600	Weak transcription	NH-A	brain
16	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:15950200-15951400	Enhancers	K562	blood
19	chr6:15950400-15951400	Weak transcription	Fetal Heart	heart
20	chr6:15950400-15953000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:15950400-15953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:15950400-15953200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:15950600-15951600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:15950600-15952600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:15950600-15952800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:15950600-15952800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:15950600-15953000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:15950600-15953000	Weak transcription	HUVEC	blood vessel
30	chr6:15950600-15953200	Enhancers	Pancreas	Pancrea
31	chr6:15950600-15953800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:15950800-15952000	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:15950800-15952600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:15950800-15952800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:15950800-15955800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:15950800-15955800	Weak transcription	Fetal Intestine Large	intestine
37	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle

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