Variant report

Variant	rs9296994
Chromosome Location	chr6:15931538-15931539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1418671	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs16877387	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs1935785	0.89[EUR][1000 genomes]
rs2103644	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28394795	0.89[EUR][1000 genomes]
rs4716012	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093807	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6459431	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs6900771	0.83[EUR][1000 genomes]
rs6933513	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6941696	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs6942060	0.96[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9296994	ID4	cis	parietal	SCAN
rs9296994	MPHOSPH9	trans	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15928000-15936400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15930600-15931600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:15930800-15931600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
4	chr6:15930800-15931800	ZNF genes & repeats	Placenta	Placenta
5	chr6:15931000-15931600	ZNF genes & repeats	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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