Variant report

Variant	rs6900771
Chromosome Location	chr6:15953043-15953044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15935209..15937879-chr6:15952425..15954848,2	K562	blood:
2	chr6:15950314..15954724-chr6:15994866..15997380,4	K562	blood:
3	chr6:15923596..15926466-chr6:15952289..15954964,2	K562	blood:
4	chr6:15948810..15954087-chr6:16127732..16131225,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction
ENSG00000232947	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1418671	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1935785	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2103644	0.83[EUR][1000 genomes]
rs28394795	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716012	0.84[EUR][1000 genomes]
rs4716016	0.83[EUR][1000 genomes]
rs58093807	0.83[EUR][1000 genomes]
rs6459431	0.90[EUR][1000 genomes]
rs6933513	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941696	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6942060	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296994	0.83[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15953400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15949800-15953600	Weak transcription	NH-A	brain
3	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:15950400-15953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:15950400-15953200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15950600-15953200	Enhancers	Pancreas	Pancrea
9	chr6:15950600-15953800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:15950800-15955800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:15950800-15955800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:15951000-15953400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:15951000-15953400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:15951000-15953600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:15951200-15955000	Enhancers	GM12878-XiMat	blood
18	chr6:15951600-15957800	Weak transcription	Gastric	stomach
19	chr6:15951800-15954400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:15952000-15954000	Enhancers	Fetal Muscle Leg	muscle
21	chr6:15952000-15954800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:15952200-15954000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:15952200-15954000	Enhancers	Adipose Nuclei	Adipose
24	chr6:15952200-15954000	Enhancers	Right Ventricle	heart
25	chr6:15952400-15954800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:15952600-15953400	Enhancers	K562	blood
27	chr6:15952600-15953600	Enhancers	Lung	lung
28	chr6:15952600-15954000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:15952600-15954000	Enhancers	Fetal Kidney	kidney
30	chr6:15952600-15954200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:15952600-15954200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:15952600-15954200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:15952600-15954200	Enhancers	Left Ventricle	heart
34	chr6:15952600-15954200	Enhancers	Right Atrium	heart
35	chr6:15952600-15954400	Enhancers	Placenta	Placenta
36	chr6:15952800-15953200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:15952800-15953200	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:15952800-15954000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:15952800-15954000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:15952800-15954200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:15952800-15954200	Enhancers	Ovary	ovary
42	chr6:15952800-15954400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:15952800-15954400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:15953000-15953200	Enhancers	Thymus	Thymus
45	chr6:15953000-15953400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:15953000-15953400	Flanking Active TSS	Fetal Heart	heart
47	chr6:15953000-15953400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:15953000-15953800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:15953000-15954000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr6:15953000-15954000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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