Variant report

Variant	rs6459431
Chromosome Location	chr6:15949319-15949320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15941449..15944936-chr6:15948598..15951419,3	K562	blood:
2	chr6:15943539..15950749-chr6:16127377..16131631,11	K562	blood:
3	chr6:15946829..15950495-chr6:16128387..16130943,5	MCF-7	breast:
4	chr6:15937830..15939823-chr6:15946867..15949386,2	K562	blood:
5	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
6	chr6:15948810..15954087-chr6:16127732..16131225,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1418671	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16877387	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1935785	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2103644	0.87[EUR][1000 genomes]
rs28394795	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4712268	0.88[ASN][1000 genomes]
rs4716012	0.88[EUR][1000 genomes]
rs4716016	0.83[EUR][1000 genomes]
rs55891669	0.82[EUR][1000 genomes]
rs56048155	0.82[EUR][1000 genomes]
rs56182021	0.83[EUR][1000 genomes]
rs58093807	0.87[EUR][1000 genomes]
rs62388469	0.82[EUR][1000 genomes]
rs6900771	0.90[EUR][1000 genomes]
rs6933513	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6941696	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6942060	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7745980	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9296994	0.88[CEU][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15936400-15951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15944400-15951000	Weak transcription	Gastric	stomach
3	chr6:15946400-15949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15946600-15949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15946800-15949400	Weak transcription	NHEK	skin
6	chr6:15947200-15949600	Weak transcription	Psoas Muscle	Psoas
7	chr6:15947200-15952600	Weak transcription	Right Atrium	heart
8	chr6:15947400-15949600	Weak transcription	Placenta	Placenta
9	chr6:15948000-15949600	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:15948000-15949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:15948800-15949400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:15949000-15949600	Enhancers	K562	blood
13	chr6:15949000-15950000	Enhancers	Stomach Mucosa	stomach
14	chr6:15949000-15951000	Enhancers	Fetal Intestine Small	intestine
15	chr6:15949200-15949400	Enhancers	Fetal Lung	lung
16	chr6:15949200-15949800	Enhancers	NH-A	brain
17	chr6:15949200-15950400	Enhancers	Fetal Heart	heart
18	chr6:15949200-15950600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:15949200-15950600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:15949200-15950600	Enhancers	A549	lung
21	chr6:15949200-15950600	Enhancers	HUVEC	blood vessel
22	chr6:15949200-15950800	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:15949200-15950800	Bivalent Enhancer	HepG2	liver
24	chr6:15949200-15951000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:15949200-15951000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:15949200-15951400	Enhancers	Fetal Kidney	kidney

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