Variant report

Variant	rs16877387
Chromosome Location	chr6:15963332-15963333
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15961810..15964774-chr6:15968287..15970884,4	K562	blood:
2	chr6:15884328..15886585-chr6:15962945..15965277,2	K562	blood:
3	chr6:15961633..15964973-chr6:16129383..16131878,3	K562	blood:
4	chr6:15962076..15964774-chr6:15968924..15970806,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1013049	0.82[JPT][hapmap]
rs11752012	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[ASN][1000 genomes]
rs1418671	0.84[CEU][hapmap]
rs1935785	0.82[EUR][1000 genomes]
rs28394795	0.83[EUR][1000 genomes]
rs4716016	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55891669	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56048155	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56182021	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62388469	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459431	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6941696	0.92[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs6942060	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9296994	0.87[CEU][hapmap];0.81[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16877387	MPHOSPH9	trans	cerebellum	SCAN
rs16877387	ID4	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
2	chr6:15961400-15963600	Enhancers	HMEC	breast
3	chr6:15961400-15964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:15961400-15964000	Enhancers	HUVEC	blood vessel
5	chr6:15961600-15963400	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:15961600-15963600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:15961600-15963600	Enhancers	NHEK	skin
10	chr6:15961600-15963800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:15961600-15964600	Weak transcription	K562	blood
12	chr6:15961800-15963400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:15962000-15963400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15962000-15963400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:15962000-15963400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15962000-15963600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:15962000-15963600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:15962000-15963600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:15962000-15963600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:15962000-15963600	Enhancers	NHDF-Ad	bronchial
21	chr6:15962200-15963400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:15962400-15963600	Enhancers	NHLF	lung
23	chr6:15962600-15963600	Weak transcription	Fetal Thymus	thymus
24	chr6:15962600-15965400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:15963000-15966200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:15963200-15966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:15963200-15969000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:15963200-15969000	Weak transcription	Placenta Amnion	Placenta Amnion

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