Variant report

Variant	rs56190730
Chromosome Location	chr5:16503800-16503801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16486503..16488546-chr5:16503272..16506201,2	K562	blood:
2	chr5:16502543..16505199-chr5:16528259..16530477,2	MCF-7	breast:
3	chr5:16503335..16504942-chr5:16508539..16510246,2	K562	blood:

Variant related genes	Relation type
ENSG00000154153	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13155177	0.84[AMR][1000 genomes]
rs35379096	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35413922	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35429573	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35431678	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35806092	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4702147	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4702148	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56012028	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16495800-16504400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:16495800-16509000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:16496200-16509000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:16497000-16505800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:16497000-16506200	Weak transcription	Thymus	Thymus
6	chr5:16497200-16504600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:16497200-16506800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:16498000-16504600	Weak transcription	Fetal Intestine Large	intestine
9	chr5:16498800-16505400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:16500600-16504000	Weak transcription	Pancreas	Pancrea
11	chr5:16500600-16507400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:16500800-16505200	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:16501000-16504600	Weak transcription	Right Ventricle	heart
14	chr5:16501200-16509000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:16501400-16504000	Weak transcription	Primary T cells from cord blood	blood
16	chr5:16502400-16508800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:16503200-16503800	Weak transcription	Stomach Mucosa	stomach
18	chr5:16503200-16504000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:16503200-16504000	Weak transcription	Psoas Muscle	Psoas
20	chr5:16503200-16504000	Weak transcription	Right Atrium	heart
21	chr5:16503200-16504400	Weak transcription	Left Ventricle	heart
22	chr5:16503200-16505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:16503200-16505800	Weak transcription	Gastric	stomach
24	chr5:16503200-16507400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:16503200-16507600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:16503400-16504000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
27	chr5:16503400-16504400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
28	chr5:16503400-16505000	Enhancers	Hela-S3	cervix
29	chr5:16503400-16505400	Weak transcription	Fetal Heart	heart
30	chr5:16503400-16507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:16503400-16507600	Weak transcription	NHEK	skin
32	chr5:16503400-16508000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:16503400-16508600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:16503400-16508800	Weak transcription	Brain Substantia Nigra	brain
35	chr5:16503800-16504000	Enhancers	Stomach Mucosa	stomach
36	chr5:16503800-16507800	Weak transcription	Osteobl	bone
37	chr5:16503800-16509200	Weak transcription	Brain Anterior Caudate	brain

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