The 2.0 version of rSNPBase

Variant report

Variant rs35429573
Chromosome Location chr5:16504348-16504349
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16495800-16504400 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr5:16495800-16509000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:16496200-16509000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:16497000-16505800 Weak transcription Duodenum Mucosa Duodenum
5 chr5:16497000-16506200 Weak transcription Thymus Thymus
6 chr5:16497200-16504600 Weak transcription Fetal Intestine Small intestine
7 chr5:16497200-16506800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:16498000-16504600 Weak transcription Fetal Intestine Large intestine
9 chr5:16498800-16505400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr5:16500600-16507400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr5:16500800-16505200 Weak transcription Fetal Muscle Leg muscle
12 chr5:16501000-16504600 Weak transcription Right Ventricle heart
13 chr5:16501200-16509000 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr5:16502400-16508800 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr5:16503200-16504400 Weak transcription Left Ventricle heart
16 chr5:16503200-16505600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr5:16503200-16505800 Weak transcription Gastric stomach
18 chr5:16503200-16507400 Weak transcription Brain Cingulate Gyrus brain
19 chr5:16503200-16507600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:16503400-16504400 Genic enhancers Skeletal Muscle Male skeletal muscle
21 chr5:16503400-16505000 Enhancers Hela-S3 cervix
22 chr5:16503400-16505400 Weak transcription Fetal Heart heart
23 chr5:16503400-16507400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr5:16503400-16507600 Weak transcription NHEK skin
25 chr5:16503400-16508000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr5:16503400-16508600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr5:16503400-16508800 Weak transcription Brain Substantia Nigra brain
28 chr5:16503800-16507800 Weak transcription Osteobl bone
29 chr5:16503800-16509200 Weak transcription Brain Anterior Caudate brain
30 chr5:16504000-16504600 Enhancers Pancreas Pancrea
31 chr5:16504000-16504800 Enhancers Psoas Muscle Psoas
32 chr5:16504000-16505600 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
33 chr5:16504000-16506800 Strong transcription Primary T cells from cord blood blood
34 chr5:16504000-16507600 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr5:16504000-16509400 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015