Variant report

Variant	rs4620025
Chromosome Location	chr5:16454504-16454505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16449464..16453354-chr5:16453748..16457169,4	K562	blood:
2	chr5:16160155..16161946-chr5:16453809..16456643,2	K562	blood:
3	chr5:16438132..16440921-chr5:16453185..16455148,2	MCF-7	breast:
4	chr5:16445742..16447886-chr5:16454052..16456768,3	K562	blood:

Variant related genes	Relation type
ENSG00000248150	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11133849	1.00[ASN][1000 genomes]
rs11959997	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11960019	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs12186886	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158624	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163208	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167760	1.00[ASN][1000 genomes]
rs13169278	1.00[ASN][1000 genomes]
rs13174423	1.00[ASN][1000 genomes]
rs13174815	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13175322	1.00[ASN][1000 genomes]
rs13181082	1.00[ASN][1000 genomes]
rs13183026	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	1.00[ASN][1000 genomes]
rs17548729	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344458	1.00[ASN][1000 genomes]
rs34610986	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35688054	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889076	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702145	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs4702150	1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6554928	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6554929	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6875404	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883888	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884712	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888052	1.00[ASN][1000 genomes]
rs6888589	1.00[ASN][1000 genomes]
rs6891867	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723124	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9968771	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:16445000-16456000	Strong transcription	Stomach Smooth Muscle	stomach
4	chr5:16445400-16455600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:16445400-16456000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr5:16445400-16456200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:16445600-16454800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:16445600-16454800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:16445600-16454800	Strong transcription	HSMM	muscle
10	chr5:16445600-16455400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:16445600-16455600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:16445800-16455000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:16445800-16455600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:16445800-16455800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:16445800-16455800	Strong transcription	Dnd41	blood
16	chr5:16445800-16456000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:16445800-16456200	Strong transcription	Primary B cells from cord blood	blood
18	chr5:16445800-16463800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr5:16446000-16455600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:16446000-16456000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:16446000-16456000	Strong transcription	Fetal Muscle Leg	muscle
22	chr5:16446200-16455600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:16446200-16455800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr5:16446200-16455800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr5:16446200-16456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:16446200-16458000	Strong transcription	Fetal Stomach	stomach
27	chr5:16446400-16455000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:16446600-16456000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:16447000-16454800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr5:16447000-16455200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:16447000-16455600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:16447000-16456000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:16447000-16463600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:16447200-16456000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:16447200-16461400	Strong transcription	Fetal Intestine Large	intestine
36	chr5:16447200-16463800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:16447200-16464800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr5:16447600-16455000	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr5:16447800-16455800	Strong transcription	Osteobl	bone
40	chr5:16447800-16456000	Weak transcription	Stomach Mucosa	stomach
41	chr5:16448200-16463600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr5:16448400-16454800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:16448400-16455400	Strong transcription	GM12878-XiMat	blood
44	chr5:16448400-16455800	Strong transcription	Primary T cells from cord blood	blood
45	chr5:16448400-16455800	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr5:16448400-16457600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr5:16448400-16462000	Strong transcription	Placenta	Placenta
48	chr5:16448400-16463400	Strong transcription	Thymus	Thymus
49	chr5:16448400-16464000	Strong transcription	Fetal Thymus	thymus
50	chr5:16448600-16463800	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links