Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16437658..16439177-chr5:16439808..16441731,2	K562	blood:

Variant related genes	Relation type
ENSG00000248150	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11959997	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11960019	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12186886	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13156308	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13158624	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13163208	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13174815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13183026	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17548729	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34171525	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34610986	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35688054	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849100	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3889076	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4620025	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6554928	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554929	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6875404	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6884712	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6891867	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7723124	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9968771	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16435600-16439400	Weak transcription	Right Atrium	heart
8	chr5:16435600-16450400	Weak transcription	Fetal Heart	heart
9	chr5:16435800-16445400	Weak transcription	Right Ventricle	heart
10	chr5:16435800-16445600	Weak transcription	HSMMtube	muscle
11	chr5:16437000-16445800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:16438000-16449200	Weak transcription	Aorta	Aorta
13	chr5:16438200-16449000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:16438600-16448400	Weak transcription	Fetal Intestine Small	intestine

Quick Search: