Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:16262076..16264265-chr5:16432783..16434475,2	K562	blood:
2	chr5:16431881..16434075-chr5:16434927..16437760,2	K562	blood:
3	chr5:16433331..16435190-chr5:16462896..16465890,2	MCF-7	breast:
4	chr5:16431085..16433776-chr5:16465183..16467258,2	K562	blood:

Variant related genes	Relation type
ENSG00000173545	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11959997	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11960019	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12186886	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13156308	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13158624	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13163208	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174815	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13183026	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17548729	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34171525	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34610986	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35688054	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849100	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3889076	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4620025	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4702145	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554928	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554929	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875404	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6884712	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6891867	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7723124	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16431200-16434200	Weak transcription	Fetal Heart	heart
5	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell

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