Variant report

Variant	rs7723124
Chromosome Location	chr5:16455773-16455774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16449464..16453354-chr5:16453748..16457169,4	K562	blood:
2	chr5:16160155..16161946-chr5:16453809..16456643,2	K562	blood:
3	chr5:16445742..16447886-chr5:16454052..16456768,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11959997	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11960019	0.83[EUR][1000 genomes]
rs12186886	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13156308	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13158624	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13163208	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13174815	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13183026	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17548729	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34171525	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34610986	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35688054	0.83[EUR][1000 genomes]
rs3849100	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3889076	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4620025	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4702145	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6554928	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6554929	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6875404	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6883888	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6884712	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6891867	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9968771	0.84[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:16445000-16456000	Strong transcription	Stomach Smooth Muscle	stomach
3	chr5:16445400-16456000	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr5:16445400-16456200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:16445800-16455800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:16445800-16455800	Strong transcription	Dnd41	blood
7	chr5:16445800-16456000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:16445800-16456200	Strong transcription	Primary B cells from cord blood	blood
9	chr5:16445800-16463800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr5:16446000-16456000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:16446000-16456000	Strong transcription	Fetal Muscle Leg	muscle
12	chr5:16446200-16455800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr5:16446200-16455800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr5:16446200-16456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:16446200-16458000	Strong transcription	Fetal Stomach	stomach
16	chr5:16446600-16456000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:16447000-16456000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:16447000-16463600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:16447200-16456000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:16447200-16461400	Strong transcription	Fetal Intestine Large	intestine
21	chr5:16447200-16463800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:16447200-16464800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:16447800-16455800	Strong transcription	Osteobl	bone
24	chr5:16447800-16456000	Weak transcription	Stomach Mucosa	stomach
25	chr5:16448200-16463600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:16448400-16455800	Strong transcription	Primary T cells from cord blood	blood
27	chr5:16448400-16455800	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr5:16448400-16457600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr5:16448400-16462000	Strong transcription	Placenta	Placenta
30	chr5:16448400-16463400	Strong transcription	Thymus	Thymus
31	chr5:16448400-16464000	Strong transcription	Fetal Thymus	thymus
32	chr5:16448600-16463800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:16448800-16456200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:16449000-16456400	Strong transcription	Colonic Mucosa	Colon
35	chr5:16449200-16456000	Strong transcription	Aorta	Aorta
36	chr5:16449200-16463600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:16451600-16465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:16452200-16455800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr5:16452200-16455800	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:16452200-16456000	Weak transcription	Small Intestine	intestine
41	chr5:16452400-16463400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr5:16452600-16457800	Weak transcription	Gastric	stomach
43	chr5:16452800-16455800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:16452800-16455800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr5:16452800-16456000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:16453000-16457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:16453000-16459400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr5:16453200-16456000	Weak transcription	Spleen	Spleen
49	chr5:16453200-16460000	Weak transcription	Fetal Brain Male	brain
50	chr5:16453200-16461000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links