Variant report

Variant	rs12186886
Chromosome Location	chr5:16437581-16437582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16431881..16434075-chr5:16434927..16437760,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF622-1	chr5:16437483-16438024	NR_104625
2	lnc-ZNF622-1	chr5:16437483-16438024	XLOC_004743

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11133849	1.00[ASN][1000 genomes]
rs11959997	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11960019	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12186470	1.00[ASN][1000 genomes]
rs13154545	0.81[AMR][1000 genomes]
rs13155177	1.00[ASN][1000 genomes]
rs13155194	1.00[ASN][1000 genomes]
rs13156308	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158624	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163208	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167760	1.00[ASN][1000 genomes]
rs13169278	1.00[ASN][1000 genomes]
rs13174423	1.00[ASN][1000 genomes]
rs13174815	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13175322	1.00[ASN][1000 genomes]
rs13181082	1.00[ASN][1000 genomes]
rs13183026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183291	1.00[ASN][1000 genomes]
rs13184355	1.00[ASN][1000 genomes]
rs13185483	1.00[ASN][1000 genomes]
rs13188528	1.00[ASN][1000 genomes]
rs17548729	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166383	1.00[ASN][1000 genomes]
rs34171525	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34344458	1.00[ASN][1000 genomes]
rs34610986	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379096	1.00[ASN][1000 genomes]
rs35413922	1.00[ASN][1000 genomes]
rs35429573	1.00[ASN][1000 genomes]
rs35431678	1.00[ASN][1000 genomes]
rs35688054	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35806092	1.00[ASN][1000 genomes]
rs3849100	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889076	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620025	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702145	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4702147	1.00[ASN][1000 genomes]
rs4702148	1.00[ASN][1000 genomes]
rs4702150	1.00[ASN][1000 genomes]
rs56012028	1.00[ASN][1000 genomes]
rs6554928	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6554929	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875404	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883888	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884712	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888052	1.00[ASN][1000 genomes]
rs6888589	1.00[ASN][1000 genomes]
rs6891867	1.00[ASW][hapmap];0.96[CEU][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723124	0.96[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9968771	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4736	chr5:16393955-16439055	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12186886	ZNF622	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16419200-16446000	Weak transcription	Pancreas	Pancrea
2	chr5:16428400-16464600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:16431000-16445600	Weak transcription	Left Ventricle	heart
4	chr5:16432600-16448600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:16432600-16454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:16433000-16449200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:16435600-16439400	Weak transcription	Right Atrium	heart
8	chr5:16435600-16450400	Weak transcription	Fetal Heart	heart
9	chr5:16435800-16445400	Weak transcription	Right Ventricle	heart
10	chr5:16435800-16445600	Weak transcription	HSMMtube	muscle
11	chr5:16437000-16445800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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